Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01605 ATGGAGGAGGAAGGTGACATATACGACGGTGTTCGAGCTCAGTTCCCTCTCTCATTCGGGAAGCAATCGAAGCCTCAAACCCCTCTTGAAGCCATCCACAATGCGACACGTCGTTCCAATTCCAATCCCAAAACAGCCAACGACCTTCCTTCTGTCTCCTCCTCTTCCAGGGATTGGCTCAATTCCCTCCGCCCTCCCAAAACCCCTACTCCTCCTCCTCCGCTGCCGCCGCCAGATCACGACGACGGCCCAATGGTGGGACCGCCGCCGCCTCCGCCCACAGCTGCCGACGAAGAAGAAGACGACGACGACGCCGAGATGATTGGCCCGCCCCCGCCTCCGCCGATCGCGTCGGAGTCCGAAGACGATTCGGATCAAGATGAGGTAGGAACCCGCTTCCGGATTCCCCTCAGCAACGAGATTGTACTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGACCACACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATATGGTACGAATGTATGATTTTCAAGGAATGAATGCTCGTTTGGAATCGTTTCGACAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGTGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAAGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAGGATGGCTCACTGCGCATATGGGATGTCAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCATGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCAATTCAGATTTGGAATATTAAGCCTGGATGGGGGAGTAGGCCAGATGTACATATTGAGAAAAGTCATGAGGATGATATTAGTGGTCTGAAATTTTCAAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTGCGCAAAACAAAAGAACCATTAAAAGTATTTGAGGATCTGCCAAATCACTATGCACAAACAAATATTGCCTTCAGTCCTGATGAGCGACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCATGACAGGAGGTTTATTGTGCTTCTTTGATAGAGTAAATCTTGAGCTTGTTTCAAAAGTTGGCATATCACCCACTTGTAGTGTTGTTCAGTGTTCTTGGCATCCCAAACTGAATCAGATCTTTGCAACTACTGGTGATAAAAGCCAAGGTGGGACTCACATACTATATGATCCAACCGTAAGTGAAAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCATGCTTTACCACTATTTAGAGATCAGCCTAGCCGTAAGCGTCAGCGAGAGAAAGTACTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCTATGACAGGTCCTGGCTTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGTGGTATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCAAAGTCAGATTCTGAGGATGAGGAGAAATGA 1845 0.4667 MEEEGDIYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSNSNPKTANDLPSVSSSSRDWLNSLRPPKTPTPPPPLPPPDHDDGPMVGPPPPPPTAADEEEDDDDAEMIGPPPPPPIASESEDDSDQDEVGTRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHDGKCIAGGIGDGSIQIWNIKPGWGSRPDVHIEKSHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKTKEPLKVFEDLPNHYAQTNIAFSPDERLFLTGTSVERESMTGGLLCFFDRVNLELVSKVGISPTCSVVQCSWHPKLNQIFATTGDKSQGGTHILYDPTVSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01605 614 MobiDBLite consensus disorder prediction 65 94 - -
Gma19g01605 614 CDD WD40 142 461 - -
Gma19g01605 614 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Gma19g01605 614 SUPERFAMILY WD40 repeat-like 125 460 IPR036322 GO:0005515
Gma19g01605 614 MobiDBLite consensus disorder prediction 17 128 - -
Gma19g01605 614 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Gma19g01605 614 Pfam WD domain, G-beta repeat 338 371 IPR001680 GO:0005515
Gma19g01605 614 Pfam WD domain, G-beta repeat 141 175 IPR001680 GO:0005515
Gma19g01605 614 Pfam WD domain, G-beta repeat 299 325 IPR001680 GO:0005515
Gma19g01605 614 Gene3D - 89 230 IPR015943 GO:0005515
Gma19g01605 614 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 614 - -
Gma19g01605 614 SMART WD40_4 332 371 IPR001680 GO:0005515
Gma19g01605 614 SMART WD40_4 281 325 IPR001680 GO:0005515
Gma19g01605 614 SMART WD40_4 234 277 IPR001680 GO:0005515
Gma19g01605 614 SMART WD40_4 136 175 IPR001680 GO:0005515
Gma19g01605 614 SMART WD40_4 185 222 IPR001680 GO:0005515
Gma19g01605 614 MobiDBLite consensus disorder prediction 511 531 - -
Gma19g01605 614 MobiDBLite consensus disorder prediction 593 614 - -
Gma19g01605 614 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Gma19g01605 614 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 279 - -
Gma19g01605 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 380 IPR001680 GO:0005515
Gma19g01605 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 286 IPR001680 GO:0005515
Gma19g01605 614 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Gma19g01605 614 Gene3D - 231 473 IPR015943 GO:0005515
Gma19g01605 614 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 373 - -
Gma19g01605 614 MobiDBLite consensus disorder prediction 511 542 - -
Gma19g01605 614 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 177 - -
Gma19g01605 614 MobiDBLite consensus disorder prediction 19 63 - -
Gma19g01605 614 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Gma19g01605 614 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Gma19g01605 614 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01605 Gma-Chr19 45425395 45429167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01605 246 444 Miscellaneous Gene Families AT5G08390 23.500 5.27e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01605 K24752 - gmx:100815380 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01605 19 45425395 45429167 Gma19g01605 19 45425395 45429167 ECH