Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01491 ATGGAATCCGAATCCAAGAACGACACCGAAGTCGCTCCGGCCTTAATCGCCGTTCACCCCGACCAATCCTCCGTCGCCGTCGCTGTGGGCCCGCACCTCCGCGTCTTCGACCTCCTTAGCGGTTCTGCAGCTTCTTTAACCGACGATTCTGATTGCGCCCCGCTCCATAAGAACAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTGTCCGCCGGTGACGATAAAACAGTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACCGTGTCCTCCGAGAAGAGAGTTACTGCAGTTGCAATTAGCAACGACGGAACATTCGTGTGCTTCGCCGACAAATTCGGCGTTGTTTGGGTTGTGGATGTTGATCCTCCGTTACACGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGTTTTATTTTAAGCGCCGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCCAGAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATTCCACAGTTCGATTGTGGAATATTGACTCTGGAGCACTTCTAGATACTTGTGAGGTTGCAATCAAGGCAGGGCTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATGGCCATGCTGTTATTGATTTATGCACTGTCCTGGATGGTTTGATTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGCTGAGTTGCAATGTTTGTGCACAAACTCTTTCTTTTGCCAAGGTGGTTTCTGTTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCCTCTATAAGGAAATTGTGGATGGTTACAGGTGTCTCTGGTCTACCTGGTTGTAATTATCTCTCTTTGGCTCGTGTGCGAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCCGGGAGATGATAACATACCCGGGGGAGAAAAACTACTAGAAACGCTGCAAGGATCTGCATCCGTTGATGACAGTGCTTTTCTAGCAACAGCTGAAGCTGTCAAAACAGCAATGTGCAACCTATTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATATAGGAAGAAAAGCAGAAATGATAGAAAACTAAAGGGCTAG 1254 0.4753 MESESKNDTEVAPALIAVHPDQSSVAVAVGPHLRVFDLLSGSAASLTDDSDCAPLHKNNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCITTVSSEKRVTAVAISNDGTFVCFADKFGVVWVVDVDPPLHDKKPAPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPQKPLNGAHQIQSFCLGHTEFVSCLAFIQAQECPQGLLLSGSGDSTVRLWNIDSGALLDTCEVAIKAGLLESNGKAEEHGHAVIDLCTVLDGLIVAVAIQSLQGIVLLSCNVCAQTLSFAKVVSVAGEAFVPTCLGSSPSIRKLWMVTGVSGLPGCNYLSLARVRVISGIDVEQEPVVPGDDNIPGGEKLLETLQGSASVDDSAFLATAEAVKTAMCNLLIKKQYPSENREYRKKSRNDRKLKG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01491 417 Gene3D - 97 246 IPR015943 GO:0005515
Gma19g01491 417 Gene3D - 12 96 IPR015943 GO:0005515
Gma19g01491 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Gma19g01491 417 PANTHER WD40 REPEAT PROTEIN 4 14 414 IPR028884 GO:0036265
Gma19g01491 417 SUPERFAMILY WD40 repeat-like 16 270 IPR036322 GO:0005515
Gma19g01491 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Gma19g01491 417 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Gma19g01491 417 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Gma19g01491 417 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Gma19g01491 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Gma19g01491 417 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Gma19g01491 417 SMART WD40_4 180 224 IPR001680 GO:0005515
Gma19g01491 417 SMART WD40_4 133 172 IPR001680 GO:0005515
Gma19g01491 417 SMART WD40_4 88 126 IPR001680 GO:0005515
Gma19g01491 417 SMART WD40_4 45 85 IPR001680 GO:0005515
Gma19g01491 417 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 409 IPR028884 GO:0036265
Gma19g01491 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01491 Gma-Chr19 44266320 44269229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01491 56 231 Miscellaneous Gene Families AT5G08390 22.826 6.95e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01491 K15443 - gmx:100786310 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01491 19 44266320 44269229 Gma19g01491 19 44266320 44269229 ECH
Gma19g01491 19 44266320 44269229 Gma03g01434 03 40557624 40560402 GST