Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01337 ATGGTTGTTCTGAGCGACTGCAGAGACATTTGCAAGGTGCTGGTGTGGTTCACACACACAAGGTCCCTCCGGAAGGGTCTCCAACTCCATGGGCAAGTTATCAAATTAGGGTTCGAAGCCATTCCATTGGTGTGCCACCACTTGATCAACTTCTACTCCAAAACCAACCTCCCTCACTCTTCGCTCAAACTCTTCGATTCTTTTCCCCACAAATCCGCCACCACATGGAGCTCCGTCATCTCCTCCTTCGCCCAGAACGACCTCCCCCTCCCTGCTCTCCGCTTCTTCCGCCGCATGCTCCGCCACGGCCTCCTCCCCGACGATCACACACTCCCCACCGCCGCCAAGTCCGTCGCTGCCCTCTCCTCCCTCCCCCTCGCCCTCTCCCTCCACGCCCTCTCCCTCAAAACCGCCCACCACCACGACGTCTTCGTCGGAAGCTCCCTCGTCGACACGTACGCTAAATGCGGCGACGTCAACCTCGCGCGCAAGGTGTTCGACGAAATGCCTCACAAAAACGTCGTCTCCTGGAGCGGTATGATATACGGATATTCTCAGATGGGTCTCGACGAGGAGGCTTTGAACCTGTTTAAACGTGCTCTGGAGCAGGATTATGATATAAGGGTTAATGATTTTACGCTTTCTAGTGTTTTGAGGGTGTGTAGTGCTTCCACGTTGTTTGAGCTGGGGAAGCAAGTGCATGGACTGTGCTTTAAAACAAGTTTTGATTCTTCATGCTTTGTGGCTAGCTCGTTGATCTCGTTGTACTCTAAGTGCGGGGTTGTAGAAGGAGGTTACAAGGTTTTTGAGGAGGTGAAAGTTAGGAACCTTGGCATGTGGAACGCAATGTTGATTGCGTGTGCTCAGCATGCACATACAGGGAGAACATTTGAGCTGTTTGAAGAGATGGAGCGTGTTGGGGTGAAGCCTAACTTCATCACATTTTTGTGTctgctttatgcgtgcagccatgcagggttggtggagaagggggaacactgctttgggttgatgaaggagcatggttttgttgtctaa 1038 0.4807 MVVLSDCRDICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGFVV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01337 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Gma19g01337 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Gma19g01337 345 Gene3D Tetratricopeptide repeat domain 127 195 IPR011990 GO:0005515
Gma19g01337 345 Gene3D Tetratricopeptide repeat domain 196 345 IPR011990 GO:0005515
Gma19g01337 345 Gene3D Tetratricopeptide repeat domain 6 123 IPR011990 GO:0005515
Gma19g01337 345 PANTHER OS01G0913400 PROTEIN-RELATED 8 342 - -
Gma19g01337 345 TIGRFAM PPR: pentatricopeptide repeat domain 75 107 IPR002885 -
Gma19g01337 345 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Gma19g01337 345 TIGRFAM PPR: pentatricopeptide repeat domain 148 174 IPR002885 -
Gma19g01337 345 TIGRFAM PPR: pentatricopeptide repeat domain 313 344 IPR002885 -
Gma19g01337 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Gma19g01337 345 Pfam PPR repeat family 278 323 IPR002885 -
Gma19g01337 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Gma19g01337 345 PANTHER BNAA10G28390D PROTEIN 8 342 - -
Gma19g01337 345 Pfam PPR repeat 147 173 IPR002885 -
Gma19g01337 345 Pfam PPR repeat 250 276 IPR002885 -
Gma19g01337 345 Pfam PPR repeat 175 201 IPR002885 -
Gma19g01337 345 Pfam PPR repeat 75 104 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01337 Gma-Chr19 42660550 42661811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01337 19 343 Glycoside Hydrolase AT3G49170 27.976 1.11e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01337 - - gmx:100800235 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01337 19 42660550 42661811 Gma19g01337 19 42660550 42661811 ECH