Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01308 ATGACAAACCCAACAGAGCCGAAAAACGAGCCCATTTCTCACAAAAATAGAAATATCTCATGTCCGAAAGCGCAGTTATCCTTAACTCACTCTTCCAACCGCGCTACTCCATCCCCAATCTCCATTTCATGCACGAAGAAGTCTAACAAGTTGGCATTCCAGGAAACGAAGGAAGGATTCGTGGACTACGACCGAGGCCAGCACGAGGTCTCCACGAAAATCTCCGGCCTCCGCAAGGACGACATTGCCGCCCGCTACCGCCTCCGCGTCTCCGGTAACCGCTTCCAGATGGACTGTACAGTATCGGAGGTCGTCGACCTCGTCCTCTCCCTTGACGTCTCCGACGACGACGTCGACGGCCTACTCAAGCGCTGGATAGGCCGCTTCGCGCGCAAGAATTTCCCCTTCCTCATCAAGGAGTTGACGCAGCGAGGGTCCATTGAACACTGTAACCGCGTGTTCCGGTGGATGAAGAACCAGAAGAAGTACTGCGCGCGTAATGATATGTACAATATGATGATTAGGTTGCACGCGAGGCATAACCGAACGGACCAGGCGCGTGGATTGTTCTTCGAGATGCAAGAGTGGAGGTGTAAACCTGATGTTGAGACTTACAATGCTCTTATCAGTGCACATGTATCTTTCTCTCTCGTAATGCTGGAAAGTGGGAACCGTATAGGTTTTGTTTTGGTTAGTGACTTAGTGTTGATATGTTCTATGCATCATATGAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCGATTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGGCACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAACTTAGACAATATGACAAAGCTATTGATATTTTTAATTCCATGAGGGAGAAGAAGTCGGATTGTATCCTTGATGTTGTTACATTCACTAGTATCATTCACTTGTATTCTGTGTCACAAAATCCCCAAAAAGCAAGAGAAATATTTGATAGGATGAAGAGAAACCAGTTGAAGCCAAATCTTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATCTTGCGAGAAATGGAACAAGAAAGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGATATGCGAGGAATTAAATTAAACACAGCTTGTATAAATATGAGGAAGAAAAAAATCAAAACTGATTCTGTTACATACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCGAAATACGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCTGTGATATGTGCCTATAGCAAACACGCAAAGAATTTGGCGAAAGCTTATGCACTCTTTGAAGAAATAGAAGCAAGTGGCATCAAGCTAGATACTATTGCCCGTGCAGCTCTAATGAGATCTTTTAATAAAGGCGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAATTACGAGAGAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGA 1707 0.4306 MTNPTEPKNEPISHKNRNISCPKAQLSLTHSSNRATPSPISISCTKKSNKLAFQETKEGFVDYDRGQHEVSTKISGLRKDDIAARYRLRVSGNRFQMDCTVSEVVDLVLSLDVSDDDVDGLLKRWIGRFARKNFPFLIKELTQRGSIEHCNRVFRWMKNQKKYCARNDMYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNALISAHVSFSLVMLESGNRIGFVLVSDLVLICSMHHMNGVGPDLVTHNIILSAIKSGAQYSKALSYFELMKGTHIRPGTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSDCILDVVTFTSIIHLYSVSQNPQKAREIFDRMKRNQLKPNLVSYNALIDAYGSNGLLADAIKILREMEQERIQPNVVSICTLLAACGRCSRKVKIDTVLTAADMRGIKLNTACINMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEVYSSVICAYSKHAKNLAKAYALFEEIEASGIKLDTIARAALMRSFNKGGQPGRVLSLAEITREKKFLSVIPYFLKWYLPVAYYKIGGQLLI 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01308 568 Gene3D Tetratricopeptide repeat domain 101 225 IPR011990 GO:0005515
Gma19g01308 568 PANTHER OS07G0213300 PROTEIN 40 336 - -
Gma19g01308 568 PANTHER OS07G0213300 PROTEIN 332 545 - -
Gma19g01308 568 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 332 545 - -
Gma19g01308 568 TIGRFAM PPR: pentatricopeptide repeat domain 358 392 IPR002885 -
Gma19g01308 568 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Gma19g01308 568 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Gma19g01308 568 TIGRFAM PPR: pentatricopeptide repeat domain 442 472 IPR002885 -
Gma19g01308 568 TIGRFAM PPR: pentatricopeptide repeat domain 287 315 IPR002885 -
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Gma19g01308 568 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 40 336 - -
Gma19g01308 568 Pfam Pentatricopeptide repeat domain 319 370 IPR002885 -
Gma19g01308 568 Pfam Pentatricopeptide repeat domain 373 403 IPR002885 -
Gma19g01308 568 Pfam PPR repeat family 440 487 IPR002885 -
Gma19g01308 568 Pfam PPR repeat family 170 212 IPR002885 -
Gma19g01308 568 Gene3D Tetratricopeptide repeat domain 317 430 IPR011990 GO:0005515
Gma19g01308 568 Gene3D Tetratricopeptide repeat domain 234 316 IPR011990 GO:0005515
Gma19g01308 568 Gene3D Tetratricopeptide repeat domain 431 551 IPR011990 GO:0005515
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 510 IPR002885 -
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Gma19g01308 568 Pfam PPR repeat 287 314 IPR002885 -
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Gma19g01308 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01308 Gma-Chr19 42318127 42324313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01308 169 532 Glycosyltransferase AT1G05670 23.711 4.70e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01308 - - gmx:100814643 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01308 19 42318127 42324313 Gma03g01264 03 38639181 38646215 GST