Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01154 ATGGAATCGAGCGTTCTGGAATGGCTGGGCGTGGAGATAATTGGCGTGATGAGCCCCGTCTCGATCTGCATGTTCCTTGTGGTCCTACTGGTGTACTCCCTCTCCTCGCCGTCCACCACCGCCACCACCATCGCCACCGCCGCCAACCTCGTCTACGCTGAGAACCCCTCCGACACCGCCGCGCAGAAGCTCGAGGGCGCGGTCCTCAACGCCGTCGTCTTCATCGTCTTCATCGCGCTCGCAACCTTCCTCCTCGTCCTCCTCTACTACTACAACTGCACCGCCTTCCTCCTCCACTACACGCGCTTCTCCACCTTCTTCGTCCTCGCCGCCATGGGCGGATCCATCCTCCTCTCCCTCCTGGAACGCTTCTCCGTCCCCCTCGACGCCGTCACCTCCTTTCTCCTCCTCTTCAACTTCGCCGTCGTCGGAGTCCTCTCCGTCTTTGCCGGCGGCGGCCTCCCGATCCTGCTCCGCCAGTGCTACACGGTCTGCCTCGGCATCATCGTTGCCGCGTGGTTCACCAAGCTTCCCGAGTGGACCACGTGGACGGTCCTCGTCGCGCTCGCGCTCTACGACCTGGTAGCCGTCCTCGCTCCCGGCGGCCCGCTCAAGCTCCTCGTCGAATTGGAGTCGAGCCGCAACGAGGAGCTCCCGGCGCTGGTCTACGAGGCACGGCCGACGGTGAATACGCGAAACCACGCCGCGGCGGTTGGGTTTATCGTCGCCGGGGTTTCGGATTCCGAAACTTCCAGAATTGAGCTTCAGGTAGTGTCTAGGGTTAATAGTAATAATAATAACAATTTGAGTAGTAACAATGATAATGGGGAGAATGGGATTAACGATGAATGGGAAAGGTCGCCGTTGGTTGGTGGAATGAGATTTGGTGAGGTTGTTGTTGATGAGGGAATGTCGCCACTTGTTGAGATGAGTGGTGTGGGGGAAAATGAGGAGGAAGGGGAAGGGGTGAGGAGGAAGATTGGTGAAAGAGGGATTAAGTTTGGACTTGGGGACTTTGTTTTCTACAGTGTTCTTGTGGGTAGAGCGGCTATGTATGATTTGATGACTGTGTATGCGTGCTACCTCGCCATTATTTCGGGGCTTGGCTGCACGCTCATTTTGTTGTCCATGTGCCGGAAGGCTCTGCCAGCCCTTCCGATTTCGATCGCATTGGGGGTTCTGTTCTACTTTTTGACAAGGCTGCTCATGGAGCCCTTCATTGTTGGGACTGCGACCAATTTGATGATGTTTTGA 1254 0.5686 MESSVLEWLGVEIIGVMSPVSICMFLVVLLVYSLSSPSTTATTIATAANLVYAENPSDTAAQKLEGAVLNAVVFIVFIALATFLLVLLYYYNCTAFLLHYTRFSTFFVLAAMGGSILLSLLERFSVPLDAVTSFLLLFNFAVVGVLSVFAGGGLPILLRQCYTVCLGIIVAAWFTKLPEWTTWTVLVALALYDLVAVLAPGGPLKLLVELESSRNEELPALVYEARPTVNTRNHAAAVGFIVAGVSDSETSRIELQVVSRVNSNNNNNLSSNNDNGENGINDEWERSPLVGGMRFGEVVVDEGMSPLVEMSGVGENEEEGEGVRRKIGERGIKFGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSMCRKALPALPISIALGVLFYFLTRLLMEPFIVGTATNLMMF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01154 417 Gene3D Presenilin 311 408 IPR042524 -
Gma19g01154 417 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma19g01154 417 PRINTS Presenilin family signature 176 183 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma19g01154 417 PRINTS Presenilin family signature 193 210 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma19g01154 417 PANTHER PRESENILIN 1 417 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma19g01154 417 Pfam Presenilin 10 407 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma19g01154 417 PANTHER PRESENILIN 1 417 - -
Gma19g01154 417 SMART psh_8 65 403 IPR006639 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01154 Gma-Chr19 40083536 40084957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01154 1 417 Miscellaneous Gene Families AT1G08700 62.061 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01154 K04505 - gmx:100819461 725.317