Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01147 ATGGGTGGCGTGGCCCCAAGGTTCCTCTTCCTCCTCGCCACTCCCTTCCCTCTTCTCCGCCGCCACCACCACCACCACCACCACCGCAACCTCTTCCTCTTATCCACCCATTCCCTCCACCTCTCTTCTTCTCCCTCTCCTCTCCCACTCAAACTCAAAGCCTCCCAATCCCAAGCTTCCTCATTCTCCTCCTCCTCCTGGCCCGAGTGGTCCTCATTCCTCTCCCACATCTCCTCCGCCGGCTACCTCCCTTCCCTCCCCGACCAAACCTTCACCGCCGCCGCCGAACGGCTCTCCTACTCCTTCCTCCGCGACGCCACCGCCTTCCTGGCCTTCGCCCGCGACCGACCTAACCTTCTCAGGTTGCTTTCTACGAGAGACATTGCAGCGGTGGTTGAGCACGGCTCCCCCTTTCTCTTCCGCGACGCCGACGACTCCGTCAGGAAGATGAAGTCCTTTCTCTCCAACGGTGACGCCAATGTGTTGGACACTGATAGAGCAAATACAGTTGATCTAATGAAGTTTTTGCTGAGTTATGCAAGTAACCCATTTTTCTCTTCAGAAGGCAACAGTCTCAATAAAAGAGATCTTGTTGAATCATCTGTTAGAAATCTATTTGGTGAACTTTTCAAGCTGAATTATAGTGCACCTGGACCAAATGCTTTTGATTCAGTGCAAAGTCAAATGGCTGGCAGATTTGGACTGACAAAGCCTCCTGGACAAAAAATTGAAATGAAGAGGGGTGATTGGCTTTGCCCCAGCAGGTGTAATTTCATGAATTTTGCAAGAAATATCAAATGTCTTGAGTGTGAGGAAGCAAGGCCAAAAAGACAACTGGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTCTGGGTGCCACCAATACCATGCCAAATATGGGGTACGAAAATGGAAACAATCCTAATACTTCAGACATTGATGCTAGGTTAGCTGCTAATGAAGAAAAAGCACAACGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCAGTGCTGATATTAACAGTGTCATGGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTGAATAGATTTGTCGTGAGCACAAGAAAGACTCCACTGGAGAGGAGGTTGGCTAATGCTCAATACAAGAGAAACTTGTCCAATAATGACATTCCCGGGATTGAGGATTCTAAAGCTGGGGAGCCAATCAAATCCCATGACAATCTGGATGAAATGCTAAGACGTTCAGGTGGCCTTCCTCAATTTGACAATAACAACTTTGTTGATGAACAAAATGCCAGTGGAGACAGCCATCCTTCATTTGCTAGCAATACTTCACATTTTAACAATGTGAAAGGGAGCTACACTAGTACTGTTCCTCCCATTCCATTGTCTGCAGATGCACTTTCCCAAAAGTCTGAGAACTTGCTAGCAGAGGAGAGCAAAAAGGTGGTATTAGACGCTGATGTTGGATATGCTAGATTGGGAGACTGTTCACAACTTTCTAATAATTCTACTAGCCAAAATATCACAGAGGAGGACAAGGAGAAAGAGCAAGGTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGCTGAGCTGAATGATTTTCCAGATATACCAAGTGCAATATCTGATGAGGATTTCCCTGAAATAATGCCCATGCGCAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGATCGTTCTTTGACTACACCAGCATATAAGAGACTTGCGGCCATGGAACAATCTGGCAAAACCAACTTTGTCCCCTTTGTTCCCTTTCCCCCTGATTATTTTGCCAAAAAGGACAAGCAGCAGGAAGATGGAACAGATTCATCAGTGGCAGATGCAACTGCTTTGACGGATAGGGCTGATGATGATACATCTTTCATATCTGAGGTGGTGCAGCAGCCTCCAGAGATGTCAGTTGATGCTAGAGCTCAACGTGGACAGAGTCCAAATCCTTCTGAACAAAGCTCAAATAACAATGATGTTGGTTCTATGTATGGGGCAACAACCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCAGGTTCCAAATTTGACTGGGAGTTCATCCCCGGAACCAGCATCTGAGACCCAGAGTGGTAGAGCAGAGTGGACAAGAAAGAGTTTGGAGGGGTCAGCTGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCTGAGAGGTGGTTCCGTCGCATTGCACAGATTAAGGATATTTCTGAGCTCAGTCAAATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACACCATTGGAAAGGAGATTGACGTCTCAGCAGTACAGAAGAAATCTTCCAACCGCGAGCTCAGATCCAATTAAAAAAGAAAATGAAGAGGGCTGTCCCAGTGGAGTGTTCTAG 2505 0.4607 MGGVAPRFLFLLATPFPLLRRHHHHHHHRNLFLLSTHSLHLSSSPSPLPLKLKASQSQASSFSSSSWPEWSSFLSHISSAGYLPSLPDQTFTAAAERLSYSFLRDATAFLAFARDRPNLLRLLSTRDIAAVVEHGSPFLFRDADDSVRKMKSFLSNGDANVLDTDRANTVDLMKFLLSYASNPFFSSEGNSLNKRDLVESSVRNLFGELFKLNYSAPGPNAFDSVQSQMAGRFGLTKPPGQKIEMKRGDWLCPSRCNFMNFARNIKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGATNTMPNMGYENGNNPNTSDIDARLAANEEKAQRWFSKVSQLDSSADINSVMADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLSNNDIPGIEDSKAGEPIKSHDNLDEMLRRSGGLPQFDNNNFVDEQNASGDSHPSFASNTSHFNNVKGSYTSTVPPIPLSADALSQKSENLLAEESKKVVLDADVGYARLGDCSQLSNNSTSQNITEEDKEKEQGEKSERWFRKVAELNDFPDIPSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRLAAMEQSGKTNFVPFVPFPPDYFAKKDKQQEDGTDSSVADATALTDRADDDTSFISEVVQQPPEMSVDARAQRGQSPNPSEQSSNNNDVGSMYGATTSGNSRQSFNQDQVPNLTGSSSPEPASETQSGRAEWTRKSLEGSAVKEPDPLDMSEEAKAERWFRRIAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTASSDPIKKENEEGCPSGVF 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01147 834 PANTHER ZINC FINGER PROTEIN 3 827 - -
Gma19g01147 834 MobiDBLite consensus disorder prediction 805 819 - -
Gma19g01147 834 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 827 - -
Gma19g01147 834 MobiDBLite consensus disorder prediction 797 834 - -
Gma19g01147 834 ProSiteProfiles Zinc finger RanBP2 type profile. 280 309 IPR001876 -
Gma19g01147 834 ProSitePatterns Zinc finger RanBP2-type signature. 250 270 IPR001876 -
Gma19g01147 834 MobiDBLite consensus disorder prediction 517 543 - -
Gma19g01147 834 SMART zf_4 248 273 IPR001876 -
Gma19g01147 834 SMART zf_4 282 306 IPR001876 -
Gma19g01147 834 ProSitePatterns Zinc finger RanBP2-type signature. 284 303 IPR001876 -
Gma19g01147 834 ProSiteProfiles Zinc finger RanBP2 type profile. 246 276 IPR001876 -
Gma19g01147 834 MobiDBLite consensus disorder prediction 734 750 - -
Gma19g01147 834 MobiDBLite consensus disorder prediction 621 750 - -
Gma19g01147 834 SUPERFAMILY Ran binding protein zinc finger-like 240 276 IPR036443 -
Gma19g01147 834 Pfam Zn-finger in Ran binding protein and others 282 308 IPR001876 -
Gma19g01147 834 Pfam Zn-finger in Ran binding protein and others 247 275 IPR001876 -
Gma19g01147 834 MobiDBLite consensus disorder prediction 669 731 - -
Gma19g01147 834 Gene3D - 278 310 - -
Gma19g01147 834 Gene3D - 239 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01147 Gma-Chr19 40010541 40016501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01147 67 313 EF-hand Containing Proteins AT1G55040 31.379 7.17e-37 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01147 - - gmx:100792849 1572.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01147 19 40010541 40016501 Gma19g01147 19 40010541 40016501 ECH