Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01116 ATGGACTTCGATCACCACCTCACGGAGCTTTCCGCCTCCTCGCCGTTCATTCCATCCGGCGAGGACTTCCACTTCTACTACAAATTCAGGAACTTCCGCCGCCCGATCGAGGAAATTGCGAGGAGAACGCAGTCGATGCTCGACAGAATCGGCTCCGCGGAGAACATTTGGGGCAGAGGCTCGGCGTTCCCCGGTGACGTCGACGACGCGTACGAGTGGCTCGTGAACGCGAATGACGACGTTTTGGAGCTGGTGGAGGAGCTGGTGGACGAGTTGCGGATGCTCAAGAAGGACGAGGGAGAGGAATGTGACGGCGCGAATCCGAAAGTGCCGTTTCATATACCGACGATCAAGAAGCCCCAGTATGCGTACAACATTGTGGTTGATAATTCAAACGAGCCTTTTGAGCATATTTTGTTGGAGAAGAGTGATGATGGTCAGCGTTACATTCATCCACTGGAGAAACTCTCTGTTTTGGATTTTGTTGATAAAGAAAATCTCGAGAATCTTGTGCCAGTAGAGCCTCCCTCAATAGAATGCACCCCTTTCAAGCTTGTGGAGGATGTCAAAGGATTGAAGGAGGTGGCTGCTATGCTGTCTTCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGATACTCTGAAGGTCCGCAATCATGTTGGGCCATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAGTCTTCAAGAGTGTTAAAGTTGGACAGATATAGTCTGCAATATCTTTTGCAACAGTTTTGTGGGGTTACTGCAAACAAGGAATACCAGAGTGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGGATCAAATTATTTGCATTGTCTAAGGAGTCTGAAGGTTCTGATAATCCTCTACTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGCTATACGAGAAAGAGCTGCTGAAAGAAGACTCGTACCTTCATATATGGGGGTTGCGAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCGTTGTTTCAGGACTTTGGGAATGGCGTGACGGTCTTGCTCGTGCAGACGATGAAGGTCCTGGCTATGTATTGCCAAATAGAATTATTCTTGAAATCGCTAACCAGATGCCTGTCATTATAAGCAATCTACGGCGAATAGTAGGAAGGACAAAACACCCATATGTTGAGCGCAGCCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGCTGCACTACGTTTGAAAGAAGAACATGCTGCAAGTTTGTCAAATGTGATACCCGTTAAGGATGGAACTGAAGTACCTCATACACTACAAAAGGATGGATGTGCAGCAAGAGGAAGCATGGGAATTGAAAATGGCTCCTGTGTTGATATCACACAAAACTGTATGCTTTCTTATGACCAAGAGGAGAAAAGTTTTCAGCATCAAGTTGAAGATGGACTATCCGATTGTCTCAATTCAGATCTACTAAGGGTCAAGAAGGAGATCAAGCCGGAACAGAGTAGATCGTCGTTAAATATTCCATCTCCCTTATTGTTGGGCAACAATGAGAAGTCAAGACTAGTTGCAGAAACTCCAAGTGTAACATATGAAACATCATACTCACGGGAGAAACTTGTTTCAGGTTCACCTTCTACCTCCAACCCTATTGGGATGGTAATGGTAGATTCAGCCAAGGAAAAGAAGATGAACGATGAGTAA 1932 0.4513 MDFDHHLTELSASSPFIPSGEDFHFYYKFRNFRRPIEEIARRTQSMLDRIGSAENIWGRGSAFPGDVDDAYEWLVNANDDVLELVEELVDELRMLKKDEGEECDGANPKVPFHIPTIKKPQYAYNIVVDNSNEPFEHILLEKSDDGQRYIHPLEKLSVLDFVDKENLENLVPVEPPSIECTPFKLVEDVKGLKEVAAMLSSVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQSSRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAGFNAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPYVERSLDVIVNIVRHSMQNAAAFEEAALRLKEEHAASLSNVIPVKDGTEVPHTLQKDGCAARGSMGIENGSCVDITQNCMLSYDQEEKSFQHQVEDGLSDCLNSDLLRVKKEIKPEQSRSSLNIPSPLLLGNNEKSRLVAETPSVTYETSYSREKLVSGSPSTSNPIGMVMVDSAKEKKMNDE 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01116 643 Pfam HRDC domain 405 459 IPR002121 GO:0003676
Gma19g01116 643 PANTHER 3'-5' EXONUCLEASE 1 632 - -
Gma19g01116 643 SMART hrdc7 402 482 IPR002121 GO:0003676
Gma19g01116 643 MobiDBLite consensus disorder prediction 612 643 - -
Gma19g01116 643 Pfam 3'-5' exonuclease 185 348 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gma19g01116 643 SUPERFAMILY HRDC-like 387 478 IPR010997 GO:0000166|GO:0044237
Gma19g01116 643 Pfam PMC2NT (NUC016) domain 12 92 IPR012588 GO:0000176|GO:0006396
Gma19g01116 643 SUPERFAMILY Ribonuclease H-like 117 382 IPR012337 -
Gma19g01116 643 SMART 35exoneu6 183 352 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gma19g01116 643 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 632 IPR045092 GO:0000175|GO:0000467
Gma19g01116 643 CDD Rrp6p_like_exo 179 371 - -
Gma19g01116 643 Coils Coil 78 98 - -
Gma19g01116 643 ProSiteProfiles HRDC domain profile. 402 483 IPR002121 GO:0003676
Gma19g01116 643 Gene3D - 111 389 IPR036397 GO:0003676
Gma19g01116 643 MobiDBLite consensus disorder prediction 612 629 - -
Gma19g01116 643 Gene3D HRDC domain 390 485 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01116 Gma-Chr19 39400043 39419967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01116 K12591 - gmx:100804872 1289.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01116 19 39400043 39419967 Gma19g01116 19 39400043 39419967 ECH