Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01105 ATGGAAGTAGCTCTTTCCCCTCAAGTACAAAAGCCGAATTTGCAGACAACAGGTCGCAAAATTTCATGTACTGGATCTCAGAAGGATCTGTGGCTTGTTGTGCGAGAGGGATCTCTAAGTGATGTAGAGCTGGCCTTGGCATCACTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACCTTTGGGCTGACTCCTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAGGGAGGCTTCTTGCCGCTGGTGCTGATCCTGATGCCCGAGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGGAAGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGTTCTTGGAAATGACCACAGTTCAGTGGCCACTGAGGTCTTTAGTTGGGGCAGTGGTACAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGTAAAGTTGATTCACTCGGTGGTTCATTCATAAAGCTAATTTCTGCCGGGAAATTCCATAGTGTGGCACTCACTGCGCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAGAATTGTTGCTGTTGCTGCAGCAAACAAACACACGGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAACAGGGAGGGACAGCTTGGTTATGGAACCTCAAACTCAGCATCTAATTACACCCCACGTGTGGTTGAATCCTTGAAGGGAAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGCGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTTGTAGTTAGTAGGAACTTAAAGAGAAGTGGAAGCACTCTGTTAAAATTTCACCGCAAGGAACGGCTTAGTGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGCGCATTATTTTATTGGGTCTCCTCTGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGCGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGCGAAACACATTTACTAATCGTGGCTTCACTGTATCATCCTGTCTACCCTCCCAACATGATTGAGAATTCTCAGAAACTCAAGTTGGATAACAAGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAAGATATCGATTCCAGTAACATGATATCTAGTGTACAAAATGATACTTTTAGCCAGAGATCTATACCTAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCCGAGTGTCTAGTGGAGCCACGGAATGCCGTACAGCTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTATATATTTGCAGTTTCATCACATACTGTAGCAAGTGCCTCACCAGATATTCTGGCTAACCTCGAGAGGTTGTTCGACCAGAGATCATCTGAGCCATGGAGTCACCGTCGGCTGCCTACTCCAACTGCTACTTTCCCTGCCATCATCAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTTGCGACAAACCCATGAAATTGGAGAAAGTCCACAGACTAGATTCTTTTCTACACCCAAAGGATGATCCTAATAAAGAAATCTCCAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGATAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGCTCTTGAGAGCTCACTTGCAGAGCTAGGTGTTCCTGTTGAGACATCACAGAATAAAGAATCATCTTCTATGTTACCAGAAGGGAAAGGTAGTAAGAAGGGTAAACTATCCAAAAAACAAAGGAGAAAGAGTGGCAAATCAAACATAGAGCAGACAGAAATAGAATTTGTTTACTCTAAAAGTGAAGCCATTCCCAAATCTGAGGACCTGTTGGATATTGACATCATGGGGTTTCCTGATTCAAAGGTTGAAGAGGATGCCGTGTGTGAACAGATCACAGCAGACCAGGGTGCAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGCATTAGAGTTGCTGAAAGCCAAGGGTCCATCACCAAAGGCTTCAAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGCGGTGCTCTTGATGAAGCCCCGAAAGAGGTGGCTACCCCTCCACCAACACCAAAACATGAGGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTGCTTCTCTTCGTGAAATCCAGGATGAACAAAGCAAAATAAAGGTAAACAAACCAGCTGGGAGCAAAGATAAGGTGGAAGATCTTCCTGATTTTGGCAGTGGCGGCAAAATAAAGTTGAGTTCATTTCTTCCTTCCAGCCCAATACCTGTTACCTCATCTCGAAGTTCCCAGGTATCTGATGGAGAAACAAGCACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAGGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGATTTTCAATCCCTACCTGTCAAGGCTCGCCGTCCGAAACAACCGGAGTGAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCATCCTCAATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGTAGTGTCAAGATTGTCAGAAAGCAATCTTGA 3234 0.449 MEVALSPQVQKPNLQTTGRKISCTGSQKDLWLVVREGSLSDVELALASLKKSGGNINLRNTFGLTPLHIATWRNHIPIVGRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQVLGNDHSSVATEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIGAAKHHMVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSRIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPRVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKRSGSTLLKFHRKERLSVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENSQKLKLDNKDDMEELNEDILFEDIDSSNMISSVQNDTFSQRSIPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFAVSSHTVASASPDILANLERLFDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEIEFQRTCDKPMKLEKVHRLDSFLHPKDDPNKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQSKSALESSLAELGVPVETSQNKESSSMLPEGKGSKKGKLSKKQRRKSGKSNIEQTEIEFVYSKSEAIPKSEDLLDIDIMGFPDSKVEEDAVCEQITADQGAKDLAFVVQKKDALELLKAKGPSPKASKKKSKKGGLSMFLSGALDEAPKEVATPPPTPKHEGPAWGGAKFMKGSASLREIQDEQSKIKVNKPAGSKDKVEDLPDFGSGGKIKLSSFLPSSPIPVTSSRSSQVSDGETSTPPWAASGTPPQPSRPSLRDIQMQQGKKQQSLSHSPKTTTAGFSIPTCQGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01105 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 206 259 IPR000408 -
Gma19g01105 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Gma19g01105 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Gma19g01105 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Gma19g01105 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Gma19g01105 1077 MobiDBLite consensus disorder prediction 958 1036 - -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Gma19g01105 1077 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Gma19g01105 1077 SUPERFAMILY Ankyrin repeat 32 136 IPR036770 -
Gma19g01105 1077 MobiDBLite consensus disorder prediction 753 768 - -
Gma19g01105 1077 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Gma19g01105 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1076 - -
Gma19g01105 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Gma19g01105 1077 Gene3D - 129 390 IPR009091 -
Gma19g01105 1077 Gene3D - 392 510 IPR009091 -
Gma19g01105 1077 Pfam Ankyrin repeats (3 copies) 36 127 IPR002110 GO:0005515
Gma19g01105 1077 MobiDBLite consensus disorder prediction 753 791 - -
Gma19g01105 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Gma19g01105 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Gma19g01105 1077 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Gma19g01105 1077 SUPERFAMILY RCC1/BLIP-II 118 431 IPR009091 -
Gma19g01105 1077 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Gma19g01105 1077 Coils Coil 520 540 - -
Gma19g01105 1077 Gene3D Potassium Channel Kv1.1; Chain A 534 619 IPR011333 -
Gma19g01105 1077 Gene3D - 25 128 IPR036770 -
Gma19g01105 1077 Coils Coil 704 724 - -
Gma19g01105 1077 MobiDBLite consensus disorder prediction 859 1040 - -
Gma19g01105 1077 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Gma19g01105 1077 MobiDBLite consensus disorder prediction 919 945 - -
Gma19g01105 1077 SMART ANK_2a 62 91 IPR002110 GO:0005515
Gma19g01105 1077 SMART ANK_2a 96 125 IPR002110 GO:0005515
Gma19g01105 1077 SUPERFAMILY RCC1/BLIP-II 409 507 IPR009091 -
Gma19g01105 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Gma19g01105 1077 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1076 - -
Gma19g01105 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01105 Gma-Chr19 39220231 39228523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01105 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 8.69e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01105 K24810 - gmx:100800604 2063.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01105 19 39220231 39228523 Gma19g01105 19 39220231 39228523 ECH
Gma19g01105 19 39220231 39228523 Gma16g00355 16 3699505 3708066 GST