Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01043 ATGAAGGTGGCATGTTGCACCCCAGACATTAATGTTCCCTACTTGGAAACCCCAAGAACAAGGTTTGGGTCTGAGGAAGCCCTTGTCTTGCTTAAAAAATGTAGCAATTTCAAGCAGCTCAAGCAAGTCCATGGCAAAATAATCCGTTATGGTCTCACCTATGATCAATTGCTTGTGAGGAAGCTAATTCAGCTCTCTCCCTCTTATGGCAAAATGAAATATGCCACTTTGGTATTTGATCAACTCAATGCCCCAGATGTCTTCACGTGGAATGTCATGATTAGAGCTTATACCATTGGCGGTTCTCCTAAAATGGCCTTTCTTTTGTTCAAGGCCATGCTATACCAGGGCTTTGCCCCTGACAAGTTTACATACCCTTGTGTGATCAATGCTTGCATGGCCTATAATGCCCTTGATGTTGGAAGAGTGGCCCATGCTTTGGCCATCAAGATGGGATTTTGGGGTGACCTCTATGTGCAGAACACCATGATGAATCTCTACTTCAAGTGTGAGAATGTGGATGATGGATGGAACGTGTTCGATAAAATGTGTGTGCGCAATGTATTCGCGTGGACCACCGTCATTGCTGGATTTGTTGCCTGTGGGAAATTGGACACTGCCAGGGAACTATTTGAGCAGATGCCTTCCAAGAATGTTGTTTCATGGACTGCAATTATTGATGGGTATGTGAAACACAAGCAGCCCATTGAAGCCTTTGATTTGTTTGAAAGAATGCAGGCTGATAATGTGAGACCAAATGAGTACACTTTGGTGAGCTTGGTCAGAGCATGTACCGAGATGGGTAGCCTCAAGTTGGGTAGAAGGGTTCATGATTTTGCTCTCAAGAATGGTTTTGAGCTTGAGCCATTCTTGGGTACCGCGCTTATAGACATGTACAGCAAGTGTGGCAATTTAGATGATGCAAGGACAGTGTTTGATATGATGCAGATGAGAACCCTGGCTACTTGGAATACCATGATCACTAGCTTGGGTGTGCATGGGTATAGAGATGAAGCCTTATCCATTTTTGAAGAAATGGAGAAAGCAAATGAGGTTCCAGATGCTATCACTTTTGTTGGTGTGCTGAGTGCTTGCGTTTATATGAATGACCTGGAACTAGCTCAGAAGTATTTCAATCTTATGACGGATCATTATGGGAACACAATGGAAGCTAATCATGATGTTGCAGAATTACTCCACAAGAACAAACTCACTAGTTTCGACGACATTAAAAAACTTATACACAAGAAATACGGGGATTTGGATTTCTCAGAACTAGTTTTAGACCATTCCTCCACGAGCTCAAGTGGGATGCAGATTGATATCAGCAAAATAAGATGA 1341 0.4288 MKVACCTPDINVPYLETPRTRFGSEEALVLLKKCSNFKQLKQVHGKIIRYGLTYDQLLVRKLIQLSPSYGKMKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDHYGNTMEANHDVAELLHKNKLTSFDDIKKLIHKKYGDLDFSELVLDHSSTSSSGMQIDISKIR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01043 446 PANTHER BNAA06G32750D PROTEIN 20 408 - -
Gma19g01043 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Gma19g01043 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Gma19g01043 446 Pfam PPR repeat 182 214 IPR002885 -
Gma19g01043 446 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 408 - -
Gma19g01043 446 TIGRFAM PPR: pentatricopeptide repeat domain 88 121 IPR002885 -
Gma19g01043 446 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Gma19g01043 446 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Gma19g01043 446 TIGRFAM PPR: pentatricopeptide repeat domain 159 188 IPR002885 -
Gma19g01043 446 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Gma19g01043 446 TIGRFAM PPR: pentatricopeptide repeat domain 293 317 IPR002885 -
Gma19g01043 446 Pfam PPR repeat 293 318 IPR002885 -
Gma19g01043 446 Pfam PPR repeat family 217 264 IPR002885 -
Gma19g01043 446 Pfam PPR repeat family 321 365 IPR002885 -
Gma19g01043 446 Pfam PPR repeat family 85 132 IPR002885 -
Gma19g01043 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Gma19g01043 446 Gene3D Tetratricopeptide repeat domain 270 416 IPR011990 GO:0005515
Gma19g01043 446 Gene3D Tetratricopeptide repeat domain 20 138 IPR011990 GO:0005515
Gma19g01043 446 Gene3D Tetratricopeptide repeat domain 139 269 IPR011990 GO:0005515
Gma19g01043 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Gma19g01043 446 SUPERFAMILY TPR-like 173 350 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01043 Gma-Chr19 38193312 38194736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01043 31 428 Glycoside Hydrolase AT3G49170 21.635 5.24e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01043 - - gmx:100807868 896.345