Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01035 ATGGCTTCTTCTTCTTCTCTTCTCCCAAGGCCACACATTCCCACCCCCCTCATCTCCAAACTCACCTCCTCGCCAAGAACATGGAGCCTCTTCATCCTCAAATACCCTTCGCACCCCAAAACCAACAGCAACAACAACAAAAGACTAATCCTTCCCCCCACCAATGCAGTGTACACCCAAAGCCCCCACACCCCTTCCACACCCTCCAAGACCGAACTCCACAACGACGCCATCACCGTCCTCAACGAGAGGATTCGACGCGACTTCAGCAAGAAGGAGGCATTCAGAACGGTGATGGACTCGGAGGAGGCGGGGAAGTACATGCAGATGGTGAAGGTGCAGCAGCAGAGAGGGCTGCAGAAGCTGAAGGGCGACAGGGGGACCAAAGATGGCGTCTTTAGCTACAAAGTGGACCCTTACACGCTCCGTTCCGGGGACTACGTTGTGCACAGGAAAGTCGGGGTTGGGAGGTTCGTTGGGATGAGGTTTGATGTTGCCAAGAATTCTTCGCAGCACACTGAGTATGTCTTCATTGAGTATGCTGATGGCATGGCGAAGCTACCTGTCCACCAGGCTGCTAAAATGCTCTATAGATATAGCCTGCCAAATGAAACCAAAAAGCCGAAGGCATTGAGCAAGTTGAGTGATACCAGTGCGTGGGAGAGAAGAAAGGTTAAAGGGAAGGTCGCAATACAGAAGATGGTTGTGGACTTGATGGAACTCTATCTACATAGGCTCAAACAAAGAAGGCCTCCCTATCCGAAGAGTCCTGCCATGGCCAAATTCGCAGCTCAGTTTCCTTATGAACCCACGCCGGATCAGAAACGGGCATTTATTGATGTTGAGAGGGATTTGACAGAGAGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTACGTGCTATCTCCTGTGTTGTCTCAGCTAAAAAGCAAGCAATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCGGATATTAAGGTTGGACTACTAAGCAGGTTTCAGACCAAAGCAGAGAAAGAAGAGAACTTGGATAAGATTAAGAATGGTACCTTGGATATTATTGTTGGGACTCATTCACTCCTAGGAGACCGTGTTACATATAACAACCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCCTTTAAAACTTCCGTGGATGTACTTACTTTATCTGCAACTCCAATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCTAGTTTAATGTCAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCACCTCTCTTCATTTGGTGAGGACAAAGTAGTATCAGCCATCAAGTATGAGCTGGATCGTGGTGGTCAAGTTTTTTATGTTCTGCCACGAATTAAAGGACTTGATGGAGTAATGGCATTTCTTGTAGAGTCATTTCCAAATGTGGAAATAGCCATTGCCCATGGGAAGCTATACTCAAAACAATTAGAGGATACCATGGAGAAGTTTGCTCTGGGTGAAATAAAAATCCTTATCTGCACAAATATAGTTGAAAGTGGGCTCGATATTCAAAATGCAAATACCATAATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGAGCAGATAAGGAAGCCCATGCATACTTATTTTACCCTGACAAAGGCCTGCTTTCTGATCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGTCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAACAATCAGGAGATGTTGGAAATGTTGGCATTGATCTTTTTTTTGAGATGCTCTTCGAGAGCTTGTCCAAGGTTGAAGATCACCATGTTGTTTCGGTTCCTTATCACTCAGTGCAGGTTGACATAAACATCAATCCTCATCTCCCCTCTGACTACATTAATTATCTGGACAACCCTATGAAAATAATAAATGACGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCTCCATGGAGATTTTACTGAAGAAGCTTTACTTGAGGAGAATGGCTGCTGATTTAGGGATAACCAGAATTTACTCTTCAGGGAAGATGATCTATATGAAAACAAACATGAGTAAAAAGGTATTCAAGATGATGACAGAGTCCATGGCATCAGATTTACATAGAAATTCATTGGTTCTTGAGGGGGACCAAATTAAGGCTGAACTTCTTTTAGAGCTACCAAAAGAACAGCTTCTCAATTGGATCTTTCAATGCTTGGCTGAACTTCATGCTTCACTACCCTCCTTCATAAAGTACTAG 2472 0.4434 MASSSSLLPRPHIPTPLISKLTSSPRTWSLFILKYPSHPKTNSNNNKRLILPPTNAVYTQSPHTPSTPSKTELHNDAITVLNERIRRDFSKKEAFRTVMDSEEAGKYMQMVKVQQQRGLQKLKGDRGTKDGVFSYKVDPYTLRSGDYVVHRKVGVGRFVGMRFDVAKNSSQHTEYVFIEYADGMAKLPVHQAAKMLYRYSLPNETKKPKALSKLSDTSAWERRKVKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAKFAAQFPYEPTPDQKRAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDKIKNGTLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFGEDKVVSAIKYELDRGGQVFYVLPRIKGLDGVMAFLVESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHHVVSVPYHSVQVDININPHLPSDYINYLDNPMKIINDAERVAEKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIYMKTNMSKKVFKMMTESMASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01035 823 Gene3D - 669 816 IPR037235 -
Gma19g01035 823 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 9 794 - -
Gma19g01035 823 SUPERFAMILY CarD-like 137 205 IPR036101 -
Gma19g01035 823 SMART ultradead3 266 458 IPR014001 -
Gma19g01035 823 SMART CarD_TRCF_2 141 243 IPR003711 -
Gma19g01035 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 447 IPR014001 -
Gma19g01035 823 Pfam CarD-like/TRCF domain 142 242 IPR003711 -
Gma19g01035 823 SUPERFAMILY TRCF domain-like 665 813 IPR037235 -
Gma19g01035 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 591 IPR027417 -
Gma19g01035 823 Pfam TRCF domain 675 763 IPR005118 GO:0006281
Gma19g01035 823 Pfam DEAD/DEAH box helicase 292 430 IPR011545 GO:0003676|GO:0005524
Gma19g01035 823 Pfam Helicase conserved C-terminal domain 473 577 IPR001650 -
Gma19g01035 823 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 9 794 - -
Gma19g01035 823 CDD DEXHc_TRCF 256 449 - -
Gma19g01035 823 Gene3D - 145 207 - -
Gma19g01035 823 SMART TRCF_a_2_a 673 771 IPR005118 GO:0006281
Gma19g01035 823 SMART helicmild6 494 578 IPR001650 -
Gma19g01035 823 Gene3D - 142 656 IPR027417 -
Gma19g01035 823 Gene3D - 208 449 IPR027417 -
Gma19g01035 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 622 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01035 Gma-Chr19 38036078 38056913 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01035 - - gmx:100805206 1615.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01035 19 38036078 38056913 Gma16g00336 16 3536270 3539838 GST