Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01239 ATGGCACTTTTGCAACAAAAACTAGGCTTCTCATATCTACTAATCCTTTGCTTAGCCACTCTTGTTTCTTCACACAGGCCTTATACAACTCCAAGTGTCACACGCTTGACTGATTCTTTTCCTCGTGTCCAAGTTGATAGTGCTTTTTCTAAGACCTTTGGGGCCAAAAATATCCAGTTTCTTAGTAATGGGTCCACGGTCACACTGGCTCTTGACAAAATCTCAGGCTCAGGCTTGGTATCACAAAGCAGATACTCCTATGGATTCTTCAGTGCTGCAATCAAACTACCTTCTGGTTTGTCACCTGGAGTTGTTGTTGCATTTTATTTGTCTAATTCAGATAAATTTCCTCACAACCATGATGAGATAGACATTGAACTGCTTGGTCATGATAAGAGAAATGACTGGGTTATTCAAACAAATATCTATGCCAATGGAAGTGTCAGCACAGGGAGAGAAGAGAAATTCTATTTCTGGTTCGACCCAACACAGCAGTACCATTATTACAGCATCTTGTGGAACAGTTATCACACAGTGTTCTTAGTGGACAATATTCCTGTGAGAGAATTCATACACAGCAACACATACCCTTCTATTTATCCATCAAAGCCAATGTCAGTGTATGCCACAATATGGGATGGTTCAGAATGGGCTACTCATGGTGGCAAATACCCTGTTAACTATAAGTATGCACCATTTGTTGTTTCATTTGCACAAATAGAATTGAGTGGCTGCATTTCTGATCCCACAGCACCAGTTTCTTCATGCTCTAAGGCCAGTTCTTCAGGCCTAGACCCAGTTAATGGACCAGAATTTACTAAGCTATCACAGCAGCAGATAGCAGCTATGGATTGGGCAAGAAGGAAGCTCATGTTTTACTCTTACTGCAACGACAGATCCAGATTCAAAGTCATGCCACCAGAATGCCATTGA 933 0.4137 MALLQQKLGFSYLLILCLATLVSSHRPYTTPSVTRLTDSFPRVQVDSAFSKTFGAKNIQFLSNGSTVTLALDKISGSGLVSQSRYSYGFFSAAIKLPSGLSPGVVVAFYLSNSDKFPHNHDEIDIELLGHDKRNDWVIQTNIYANGSVSTGREEKFYFWFDPTQQYHYYSILWNSYHTVFLVDNIPVREFIHSNTYPSIYPSKPMSVYATIWDGSEWATHGGKYPVNYKYAPFVVSFAQIELSGCISDPTAPVSSCSKASSSGLDPVNGPEFTKLSQQQIAAMDWARRKLMFYSYCNDRSRFKVMPPECH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01239 310 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 237 IPR000757 GO:0004553|GO:0005975
Gma18g01239 310 Gene3D - 29 309 - -
Gma18g01239 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 1 310 - -
Gma18g01239 310 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 310 IPR044791 GO:0004553
Gma18g01239 310 Pfam Glycosyl hydrolases family 16 48 229 IPR000757 GO:0004553|GO:0005975
Gma18g01239 310 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 309 IPR013320 -
Gma18g01239 310 PIRSF EndGlu_transf 8 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma18g01239 310 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 273 309 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01239 Gma-Chr18 20117528 20119401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01239 13 310 Glycoside Hydrolase AT1G10550 64.026 3.59e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01239 K08235 - gmx:100778993 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01239 18 20117528 20119401 Gma18g01239 18 20117528 20119401 ECH