Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01187 ATGAAGAACAAACCCATCATCCTTGCTCTCTTAATTTCCTTCTCTCTCACAAACGTAGTCGTTTCAGCTCGACTCTTTCCCAACGTCTCCTCCTGGCTCGACGCCCACGCGCCTCTTCCGAGAGGCGCGTGGGGAGCCTTTCTCAACTTCACCGGCTGCCACCGCGGTGACAAGTACGACGGTCTCGCCAATTTAAAGTCTTACTTTGAACGCTTCGGTTACATTCCTCACGCGCCGCCGCCGTCGAATTTCTCCGATGAATTCGACGACGCGCTCGAATCCGCCATCAAAACTTACCAGAAGAACTTCAACCTCAACGTCACGGGCGTCCTCGACGATGCCACGCTCCAGAAGATCGTGCTGCCGCGGTGCGGCGTCGCCGATATAATCAACGGCACAACCACGATGAACGCTGGCAAGGAGAACGAGACGGCATCGTTTAGCAAGCCGAAGTTTCACACGGTGGCGCACTTCAGTCTTTTTCCCGGCATGCCGCGGTGGCCGGAGGGAACGCAGGAACTGACGTACGCGTTCTTCCCCGGGAACGAGCTGAGCGACACCGTGAAAGGCGTGTTCGCCACCGCGTTCGCGCGCTGGGCGGAGGTGACGTCGCTGAAGTTCCGCGAATCGGCGTCGTACTTCGGCGCCAACATCAGGATCGGGTTCTTCAGCGGGGACCACGGCGACGGGGAGCCGTTCGACGGGAGCTTGGGGACGCTGGCGCACGCGTTCTCGCCGACGAACGGGAGGTTCCATCTGGATGCCGCCGAGGACTGGGTGGTTTCCGGCGACGTGACGCTGTCGGCGCTGCCGACCGCGGTGGATTTGGAATCCGTGGCGGTGCACGAGATTGGGCACTTGCTAGGGTTAGGCCACTCGTCGGTGGAAGAAGCGGTTATGTTTCCGACGATTTCGTCGCGGAAGAAGAAGGTGGTGCTGGCAAGGGACGATATCGAAGGGATTCAATTCCTCTACGGTTCCAACCCTAATTTCAATGGCTCCACCGCCACGTCAGCACCGGAGAGAGACGCCAGTGACGGTGGTCGTTGCCTCACTTGTGTGGGGCCCTCGTCCGGCGTTTTCACTTTGTTGACTTTTGCCTTTGCACATTTTGTGTTATTAATATAG 1128 0.5842 MKNKPIILALLISFSLTNVVVSARLFPNVSSWLDAHAPLPRGAWGAFLNFTGCHRGDKYDGLANLKSYFERFGYIPHAPPPSNFSDEFDDALESAIKTYQKNFNLNVTGVLDDATLQKIVLPRCGVADIINGTTTMNAGKENETASFSKPKFHTVAHFSLFPGMPRWPEGTQELTYAFFPGNELSDTVKGVFATAFARWAEVTSLKFRESASYFGANIRIGFFSGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDAAEDWVVSGDVTLSALPTAVDLESVAVHEIGHLLGLGHSSVEEAVMFPTISSRKKKVVLARDDIEGIQFLYGSNPNFNGSTATSAPERDASDGGRCLTCVGPSSGVFTLLTFAFAHFVLLI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01187 375 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 161 330 - -
Gma18g01187 375 CDD ZnMc_MMP 166 326 IPR033739 GO:0008237|GO:0008270
Gma18g01187 375 SUPERFAMILY PGBD-like 53 129 IPR036365 -
Gma18g01187 375 Pfam Putative peptidoglycan binding domain 63 119 IPR002477 -
Gma18g01187 375 PANTHER MATRIX METALLOPROTEINASE 10 369 - -
Gma18g01187 375 Pfam Matrixin 171 326 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gma18g01187 375 Gene3D Collagenase (Catalytic Domain) 50 332 IPR024079 GO:0008237
Gma18g01187 375 SMART col_5 163 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gma18g01187 375 PANTHER MATRIX METALLOPROTEINASE 10 369 - -
Gma18g01187 375 PRINTS Matrixin signature 119 132 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma18g01187 375 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma18g01187 375 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma18g01187 375 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gma18g01187 375 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01187 Gma-Chr18 18296930 18298334 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01187 - - gmx:100784544 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01187 18 18296930 18298334 Gma18g01187 18 18296930 18298334 ECH