Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01160 ATGGCTCACAGGCTGGTTTTCGAGTTCTGGGAAAAGTCCCATTTGGACGTTGGAAACTCTTTTGATCGATTTACTGAGAGGTTGATTTATACTTACAAGGACTGGGGTGCACATCCCCGTGTGTTTGATGTGTTCTTCCTAGTTCTTGTTGAGGCAGGGTTGCTTCTAGAAGCTGGGAAACTGTTTGATAAGTTGTTAAATTACGGTGTTCTTGTCTCTGTAGATTCTTGTAATTTGTTTCTAGCTAGGCTATCTAACAGTTTTGATGGGATAAAGACGGGAATTAGGGTGTTCAGAGAGTATCCAGAAGTGGGTGTTTGTTGGAACACTGTGTCGTATAACATTATTCTTCATTCGCTTTGTCAATTGGGAAGGGTAAAAGAAGCACATAATCTGGTAATACAGATGGAGTTTAGGGGGAATGTTCTGGATGTTGTTAGTTATAGCATTATAATTGATGGATATTGTCAGGTTGAAGGAAAGGTCTTGAAGCTCATGGAAGAGTTGCAGAGAAAGGGATTGAAACCGAATCAATACACGTACATTAGCATAATTTCTCTTCTTTGTAAGACTGGTAGAGTAGTTGAAGCAGGGCAGGTCTTGAGGGAGATGAAAAATCAGAGGATTTTTCCTGATAATGTGGTGTATACAACTCTCATCAGTGGTTTTGGCAAGTCTGGGAATGTTTCAGCTGAATACAAACTCTTTGATGAAATGAAGAGGTTGGAACCAGACGAAGTTACTTATACTGCTCTTATTGACGGGTATTGCAAGGCCAGGAAAATGAAAGAGGCATTCTCTCTTCACAACCAGATGGTTGAGAAGGGTCTGACTCCTAATGTTGTCACTTATACTGCATTAGTTGATGGCCTGTGTAAACGTGGAGAGGTAGATATAGCAAATGAGCTTCTTCATGAAATGTCTGAAAAGGGCCTTCAACCGAATGTCTGCACATATAATGCATTGATCAATGGTCTCTGTAAGGTAGGAAATATAGAGCAAGCTGTAAAACTTATGGAAGAAATGGATCTGGCAGGGTTTTATCCTGACACTATTACATATACTACACTCATGGATGCTTATTGTAAGATGGGTGAAATGGCCAAGGCTCATGAATTGCTGCGGATTATGCTTGATAAAGGACTTCAACCTACAATTGTTACATTCAATGTGCTAATGAATGGGCTTTGCATGTCAGGGATGTTGGAAGATGGTGAAAGACTAATCAAATGGATGTTGGACAAAGGTATAATGCCAAATGCAACAACATTCAATTCTCTTATGAAGCAGCACTGTATTAGAAATAACATGTGTGCCACTACTGAGATTTATATGAGGATGTGTGCTCAAGGAGTGATGCCTGACTGTAATACCTATAATATTTTGATTAAAGGGCATTGTAAAGCTAGAAATATGAAAGAGGCATGGTTCTTGCATAAAGATATAGTTGAAAAGGGATTTAGTCTAACTGATGCTTCCTATAATGCTCTTATAAAGGGTTTCTATAAGAGGAAGAAATTTGTGGAGGCTAGGAAGCTATTTGAGGAGATGAGAACATGGGTTCATTGCAGAAAAAGAGATATATGA 1587 0.3913 MAHRLVFEFWEKSHLDVGNSFDRFTERLIYTYKDWGAHPRVFDVFFLVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIKTGIRVFREYPEVGVCWNTVSYNIILHSLCQLGRVKEAHNLVIQMEFRGNVLDVVSYSIIIDGYCQVEGKVLKLMEELQRKGLKPNQYTYISIISLLCKTGRVVEAGQVLREMKNQRIFPDNVVYTTLISGFGKSGNVSAEYKLFDEMKRLEPDEVTYTALIDGYCKARKMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKRGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGLCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQHCIRNNMCATTEIYMRMCAQGVMPDCNTYNILIKGHCKARNMKEAWFLHKDIVEKGFSLTDASYNALIKGFYKRKKFVEARKLFEEMRTWVHCRKRDI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 520 IPR002885 -
Gma18g01160 528 Pfam PPR repeat 451 475 IPR002885 -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Gma18g01160 528 Pfam PPR repeat family 314 363 IPR002885 -
Gma18g01160 528 Pfam PPR repeat family 384 432 IPR002885 -
Gma18g01160 528 Pfam PPR repeat family 109 157 IPR002885 -
Gma18g01160 528 Pfam PPR repeat family 244 293 IPR002885 -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Gma18g01160 528 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 240 519 - -
Gma18g01160 528 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 27 241 - -
Gma18g01160 528 Gene3D Tetratricopeptide repeat domain 331 437 IPR011990 GO:0005515
Gma18g01160 528 Gene3D Tetratricopeptide repeat domain 238 330 IPR011990 GO:0005515
Gma18g01160 528 Gene3D Tetratricopeptide repeat domain 438 525 IPR011990 GO:0005515
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Gma18g01160 528 SUPERFAMILY HCP-like 256 515 - -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 242 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 111 144 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 493 519 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Gma18g01160 528 TIGRFAM PPR: pentatricopeptide repeat domain 214 241 IPR002885 -
Gma18g01160 528 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 240 519 - -
Gma18g01160 528 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 27 241 - -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Gma18g01160 528 Gene3D Tetratricopeptide repeat domain 162 237 IPR011990 GO:0005515
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Gma18g01160 528 Gene3D Tetratricopeptide repeat domain 47 161 IPR011990 GO:0005515
Gma18g01160 528 Pfam PPR repeat 493 518 IPR002885 -
Gma18g01160 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Gma18g01160 528 Pfam Pentatricopeptide repeat domain 164 225 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01160 Gma-Chr18 17282261 17283958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01160 276 519 Glycosyltransferase AT1G05670 25.403 2.38e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01160 - - cam:101508281 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01160 18 17282261 17283958 Gma18g01160 18 17282261 17283958 ECH