Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00198 ATGCTTTGCGTCAACACTGCCTTCACCTCTTTCTTGCCCAGAAAATCAACTTGCTTCTTTTCCTCCAAATCAACCACCCCAATTTCCTGCACCCTCCAAGGAACAGTTGCAGAACCAAAATCTACAGCTGCTGGTGAACCTCTTTTGCTAAATGCAGTTCGTGGGATAGATGTTGAAAGACCCCCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAGAAATATCCTTCATTCCGTGAAAGATCTGAAAATGTTGATCTCGTGGTGGAAATTTCTCTGCAACCATGGCATGTTTTTAAGCCCGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAGGGTCCTGTTATATTTGATCCTATTCACACAGCTGCCCAGGTTGATCAAGTGAGGGAGTTTATTCCTGAAGAATCAGTTCCATATGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGGGCACCATTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAAAACTTCTCAAAAATAAAGAGATTGGCTTTCTCTGAATCCAAGATCCTGCACTCATTACTGCAGAAGTTTACAACATCAATGGCCAGATACATTCAATACCAAGCTGACAATGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACAGAACTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACTGTGAAGAAAAGTCATCCAAACCTCCCTTTGATCCTCTATGCAAGTGGGTCTGGGGGTTTGCTTGAAAGACTAGCTTTGACAGGCGTGGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGTAGGAGGCGACTGGGACCGAATATAGCTGTCCAGGGGAACGTGGACCCTGGCGTTCTTTTTGGTTCAAAAGAGTTCATCACTGATCGGATAAATGATACTGTGAGAAAAGCAGGTAGAGGGAAACATATCTTGAATCTTGGACATGGCATTAAAGTAGGTACGCCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAATCAATCAGATACTAA 1164 0.4287 MLCVNTAFTSFLPRKSTCFFSSKSTTPISCTLQGTVAEPKSTAAGEPLLLNAVRGIDVERPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTAAQVDQVREFIPEESVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPNLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVRKAGRGKHILNLGHGIKVGTPEENVAHFFEVAKSIRY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00198 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Gma18g00198 387 SUPERFAMILY UROD/MetE-like 48 386 IPR038071 -
Gma18g00198 387 Pfam Uroporphyrinogen decarboxylase (URO-D) 48 384 IPR000257 GO:0004853|GO:0006779
Gma18g00198 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Gma18g00198 387 TIGRFAM hemE: uroporphyrinogen decarboxylase 49 383 IPR006361 GO:0004853|GO:0006779
Gma18g00198 387 CDD URO-D 50 384 IPR006361 GO:0004853|GO:0006779
Gma18g00198 387 Gene3D - 35 387 IPR038071 -
Gma18g00198 387 Hamap Uroporphyrinogen decarboxylase [hemE]. 46 386 IPR006361 GO:0004853|GO:0006779
Gma18g00198 387 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 18 387 - -
Gma18g00198 387 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 18 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00198 Gma-Chr18 1606953 1610689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00198 K01599 - gmx:100800753 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00198 18 1606953 1610689 Gma18g00198 18 1606953 1610689 ECH
Gma18g00198 18 1606953 1610689 Gma11g02375 11 39129864 39133469 GST