Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma18g00140 | ATGCTGATTTGTATCCGTCCGATCAATCTCCAACGCCTTCATCAGCACGCTATATATATCCCTATCATTCCTAACAATTTGAACCTTTGCATTCTATTCATTCAAGATTCAGCAAGTGCGTTTCGGAAGCAGAGACCGAAATACTTCGAGatggcccgtacaaagcaaactgctcgtaagtcaactggaggaaaagctcccaggaagcagcttgcaACCAAGGCTGCACGTAAGTCTGCTCCAACAACTGGTGGTGTGAAGAAGCCTCATCGTTATCGCCCTGGAACTGTTGCTCTTCGTGAGATTAGGAAATACCAGAAGAGCACTGAGCTCCTAATCAGGAAGCTTCCTTTCCAGAGGTTGGTTCGTGAAATTGCCCAGGATTTCAAGACTGATCTGCGTTTCCAGAGCCATGCTGTGCTTGCATTgcaagaggctgctgaggcataccttgttgggctctttgaggacactaacttgtgtgccattcacgccaaGCGTGTGACTATTATGCCCAAGGATATTCAGCTGGCAAGAAGGATTCGTGCCACTTTGGGAATTGTATTGGACAACTTTCTGTTGCCGTCTAATCTAGTTGAAGCTAGCTTATCGTGTCTGTTTGTTCTGATTATGGATTTCCATCCTTATGCTATTTCTCGCATATTTGGCCGAATTGCGCAACCCGTCCAGCGTAATTTGATTCAGCCACAGTTGGAAAAAAAAAAAAAGTTGTTCGAGatggcacgtacgaagcaaactgctcgtaagtccacaggaggaaaggcacctaggaagcagctcgcAACCAAGGCTGCACGTAAGTCTGCACCAACTACTGGTGGTGTGAAGAAGCCACATCGTTATCGTCCTGGTACCGTTGCTCTTCGTGAGATTAGGAAATACCAGAAGAGTACCGAGCTTTTGATCAGGAAGCTCCCCTTCCAGAGGCTGGTTCGTGAAATTGCTCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCATGCTGTGCTTGCATTgcaagaagctgctgaggcataccttgttggactctttgaggatactaatctgtgtgccattcacgCTAAGCGTGTAACTATTATGCCCAAAGATATCCAGCTGGCAAGAAGGATTCGTGGTGAGCGTGCTTGA | 1149 | 0.3525 | MLICIRPINLQRLHQHAIYIPIIPNNLNLCILFIQDSASAFRKQRPKYFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRATLGIVLDNFLLPSNLVEASLSCLFVLIMDFHPYAISRIFGRIAQPVQRNLIQPQLEKKKKLFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma18g00140 | 382 | ProSitePatterns | Histone H3 signature 1. | 261 | 267 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | ProSitePatterns | Histone H3 signature 2. | 313 | 321 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PANTHER | - | 34 | 183 | - | - | |
| Gma18g00140 | 382 | PANTHER | - | 229 | 382 | - | - | |
| Gma18g00140 | 382 | Pfam | Core histone H2A/H2B/H3/H4 | 247 | 378 | IPR007125 | GO:0003677 | |
| Gma18g00140 | 382 | Pfam | Core histone H2A/H2B/H3/H4 | 51 | 182 | IPR007125 | GO:0003677 | |
| Gma18g00140 | 382 | SMART | h35 | 280 | 382 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | SMART | h35 | 84 | 186 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PANTHER | HISTONE H3 | 34 | 183 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PANTHER | HISTONE H3 | 229 | 382 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | Gene3D | Histone, subunit A | 248 | 382 | IPR009072 | GO:0046982 | |
| Gma18g00140 | 382 | Gene3D | Histone, subunit A | 52 | 184 | IPR009072 | GO:0046982 | |
| Gma18g00140 | 382 | ProSitePatterns | Histone H3 signature 1. | 65 | 71 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 263 | 277 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 249 | 263 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 360 | 381 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 344 | 360 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 326 | 344 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 280 | 301 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | PRINTS | Histone H3 signature | 304 | 321 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | ProSitePatterns | Histone H3 signature 2. | 117 | 125 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Gma18g00140 | 382 | MobiDBLite | consensus disorder prediction | 250 | 287 | - | - | |
| Gma18g00140 | 382 | MobiDBLite | consensus disorder prediction | 54 | 90 | - | - | |
| Gma18g00140 | 382 | SUPERFAMILY | Histone-fold | 248 | 379 | IPR009072 | GO:0046982 | |
| Gma18g00140 | 382 | SUPERFAMILY | Histone-fold | 52 | 182 | IPR009072 | GO:0046982 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma18g00140 | Gma-Chr18 | 1113084 | 1117944 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma18g00140 | K11253 | - | sdm:118180030 | 495.352 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma18g00140 | 18 | 1113084 | 1117944 | Gma11g02434 | 11 | 39683392 | 39686687 | GST |