Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02505 ATGCTTCAAATTGGTTGTTCTCCTAATGTTGTGACACATACCACCTTATTTAAGGCTTTTATGCAATCCAACATGCCAACCCCTGCTTTTCGCTTGTTTAATGTCATGTTATCTGCTGGCCAATCTCCGGATTTAATTCTTTATGCTGATTTAGTGTTTTGTAATGCTCTTTTAAGCTCTCTTACTAAGGTTGACCTTCCTTCTCTTGCTGTTGGATTCTATGACCATATGATTGATGAAGCTGGTCTTCTAAAGATCGGAAAGTTTCACAAGGCTCGAGAAAAAGGCCACAAAAAGATTGTGTACTTTGTCACATTGTTCATATATGATGTTGCAAGGGATATCGTTGGTATTACAATCTTCATTGGCGTCGGTCTCTTTCAGGCAAATGAAGTCATGAAAGCAAATAACTTGTCTGATGTCGTTGTTGTATTGCATGGGCGAGTTGAGAAGTTTTACGATGCTTTCAAGCTGTGTGGGTCCCCACCCATTGCTCGCAAACTTCATGCCCAACTCATACTCTCCGGTTTGGACGCTTCCCTTTTCTTACTCAACAATCTATTGCACATGTACTCCAACTGCGGCATGGTAGACGATGCTTTTCGTGTTTTCCGCGAGGCCAACCATGCCAATATCTTCACTTGGAACACCATGCTCCATGCCTTTTTTGATTCGGGTCGAATGAGGGAAGCAGAGAACTTGTTTGATGAAATGCCCCATATAGTGAGAGACTCCGTTTCATGGACCACCATGATATCCGGCTATTGTCAAAACGGCCTCCCTGCTCATAGCATCAAAACTTTTATGTCAATGCTCCGGGACTCCAATCATGACATTCAAAACTGTGACCCCTTTTCCTATACTTGTACTATGAAGGCTTGTGGCTGCCTTGCCTCCACTCGGTTTGCTCTTCAGTTGCATGCCCATGTCATCAAGTTACATTTGGGAGCCCAAACCTGCATTCAGAACTCCCTTGTTGATATGTATATTAAGTGTGGAGCAATCACTTTGGCTGAGACTGTTTTCCTTAACATTGAAAGCCCAAGTTTGTTCTGTTGGAACAGTATGATTTATGGATATTCTCAATTATATGGACCCTATGAAGCTCTCCATGTGTTCACCCGAATGCCTGAACGTGACCATGTTTCTTGGAACACGCTGATCTCAGTGTTCTCTCAATACGGCCATGGGATCCGCTGTCTTAGTACGTTTGTGGAGATGTGCAATCTGGGGTTTAAGCCCAATTTCATGACTTATGGCAGTGTACTCAGTGCATGTGCCAGCATTTCTGATCTGAAATGGGGTGCCCATTTGCATGCTCGGATTCTTCGCATGGAACATAGCCTGGATGCGTTTTTGGGAAGTGGTCTCATAGACATGTATGCCAAATGTGGATGCTTAGCACTGGCGAGGCGTGTGTTTAACAGTTTAGGGGAACAGAATCAAGTTTCTTGGACTTGCTTGATTTCAGGGGTTGCACAGTTTGGACTTCGTGATGATGCTTTGGCACTATTTAACCAAATGAGGCAGGCTTCTGTGGTGTTGGATGAATTCACCCTTGCGACAATTCTTGGGGTTTGTTCAGGTCAAAATTATGCTGCCACTGGGGAACTACTTCATGGATATGCAATCAAAAGTGGGATGGATTCCTTTGTTCCTGTGGGGAATGCAATCATTACAATGTATGCAAGGTGTGGTGATACTGAGAAAGCTAGTCTTGCATTTAGATCAATGCCACTAAGAGATACCATATCATGGACGGCCATGATCACTGCATTCTCTCAGAATGGAGATATTGACAGGGCCCGCCAATGTTTTGATATGATGCCTGAGCGTAATGTCATAACTTGGAACTCCATGTTAAGCACATATATTCAACATGGCTTCTCGGAAGAAGGGATGAAGTTGTATGTTTTGATGAGAAGCAAAGCAGTCAAACCGGATTGGGTCACTTTTGCAACATCTATCCGGGCCTGTGCTGATTTGGCTACTATAAAACTTGGGACACAAGTCGTATCTCATGTGACAAAGTTTGGACTTAGTTCAGATGTTTCAGTTGCAAACAGTATTGTCACCATGTATTCAAGATGTGGACAAATCAAAGAAGCACGAAAAGTTTTTGACTCAATACATGTGAAAAACCTGATTTCCTGGAATGCCATGATGGCAGCATTTGCTCAAAATGGTTTAGGCAATAAAGCAATTGAAACATATGAGGATATGTTGAGGACAGAATGCAAACCTGACCATATAAGCTATGTTGCTGTTTTATCTGGTTGCAGCCACATGGGGCTTGTAGTTGAAGGGAAAAATTATTTTGATTCCATGACTCAAGTGTTTGGCATTTCTCCAACAAATGAGCACTTTGCTTGTATGGTAGATCTGCTTGGCCGAGCAGGGTTACTAGACCAGGCCAAGAATTTAATAGACGGAATGCCTTTTAAGCCAAATGCCACTGTTTGGGGTGCTCTACTAGGAGCATGCCGAATTCATCATGATTCAATACTAGCAGAAACTGCCGCAAAGAAGTTGATGGAATTAAATGTTGAAGATTCTGGAGGTTATGTTCTTCTAGCAAATATATATGCAGAGTCTGGGGAACTAGAAAATGTTGCTGATATGAGAAAGTTAATGAAAGTGAAAGGAATTCGAAAGAGTCCAGGTTGTAGCTGGATAGAGGTTGATAACAGGGTACATGTGTTTACTGTAGATGAAACCAGTCATCCACAGATAAACGAGGTTTATGTAAAACTGGAGGAGATGATGAAGAAGATAGAAGATACAGGAAGATACGTTAGTATCGTCTCTTGTGCCCATAGGAGTCAGAAATACCATAGTGAAAAGCTCGCTTTTGCTTTTGGGTTGCTTAGTTTGCCACCTTGGATGCCTATACAAGGAACTTATCATGAGAGATGGATTTCGATTTCATCATTTCAAGGATGGGTTTTGCTCCTGTCGAGACTACTGGTAAAATATATTGATAGTTATTCTGTTACCATCCAAGAGTTAGAATCTATAACAGCCAAATTTAAGTTCAATTCTATGATGCGAGCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATGCAATATCATCAACCAATTATCAATCAATTACTTCATTTGTTGACAATCATCAGATGAATGGTAATCAGAGAAAAAGGCAAACAAACCCAAATGAAGCACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAGCTGCAGTATTTATTTTTCCAATTTTCAGTTTAA 3282 0.4168 MLQIGCSPNVVTHTTLFKAFMQSNMPTPAFRLFNVMLSAGQSPDLILYADLVFCNALLSSLTKVDLPSLAVGFYDHMIDEAGLLKIGKFHKAREKGHKKIVYFVTLFIYDVARDIVGITIFIGVGLFQANEVMKANNLSDVVVVLHGRVEKFYDAFKLCGSPPIARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFDSGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYVAVLSGCSHMGLVVEGKNYFDSMTQVFGISPTNEHFACMVDLLGRAGLLDQAKNLIDGMPFKPNATVWGALLGACRIHHDSILAETAAKKLMELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCSWIEVDNRVHVFTVDETSHPQINEVYVKLEEMMKKIEDTGRYVSIVSCAHRSQKYHSEKLAFAFGLLSLPPWMPIQGTYHERWISISSFQGWVLLLSRLLVKYIDSYSVTIQELESITAKFKFNSMMRAPLHGFAFWFDVEFNGHAISSTNYQSITSFVDNHQMNGNQRKRQTNPNEALVLSTAPEDPPTHWQQLQYLFFQFSV 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Gma17g02505 1093 Gene3D - 964 1092 - -
Gma17g02505 1093 PANTHER OS07G0578800 PROTEIN-RELATED 537 597 IPR045215 GO:0003723|GO:0009451
Gma17g02505 1093 PANTHER OS07G0578800 PROTEIN-RELATED 9 227 IPR045215 GO:0003723|GO:0009451
Gma17g02505 1093 PANTHER OS07G0578800 PROTEIN-RELATED 597 965 IPR045215 GO:0003723|GO:0009451
Gma17g02505 1093 PANTHER OS07G0578800 PROTEIN-RELATED 230 530 IPR045215 GO:0003723|GO:0009451
Gma17g02505 1093 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 975 1090 IPR029063 -
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 667 768 IPR011990 GO:0005515
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 549 666 IPR011990 GO:0005515
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 483 517 IPR002885 -
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 716 749 IPR002885 -
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 584 613 IPR002885 -
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 615 649 IPR002885 -
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 213 238 IPR002885 -
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Gma17g02505 1093 TIGRFAM PPR: pentatricopeptide repeat domain 246 274 IPR002885 -
Gma17g02505 1093 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 227 - -
Gma17g02505 1093 Pfam PPR repeat family 713 761 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat family 612 660 IPR002885 -
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 612 IPR002885 -
Gma17g02505 1093 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 537 597 - -
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 241 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 246 274 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 382 412 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 556 579 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 185 206 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 483 511 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 11 40 IPR002885 -
Gma17g02505 1093 Pfam PPR repeat 352 380 IPR002885 -
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Gma17g02505 1093 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 230 530 - -
Gma17g02505 1093 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 597 965 - -
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 769 949 IPR011990 GO:0005515
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma17g02505 1093 Pfam E motif 831 893 IPR046848 -
Gma17g02505 1093 Pfam PPR repeat 211 238 IPR002885 -
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 1 100 IPR011990 GO:0005515
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 396 547 IPR011990 GO:0005515
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 278 395 IPR011990 GO:0005515
Gma17g02505 1093 Gene3D Tetratricopeptide repeat domain 152 277 IPR011990 GO:0005515
Gma17g02505 1093 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02505 Gma-Chr17 43045708 43053250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02505 160 988 Glycoside Hydrolase AT3G49170 30.374 6.80e-124 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02505 - - gmx:100795787 1653.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02505 17 43045708 43053250 Gma17g02505 17 43045708 43053250 ECH