Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02476 ATGTGGCGGCTCCACTTTACCCTCCTCCTCCCAATCCACCACGTTTACGGAGAGAGAGTGCTTGCCTACTATGGCGGGAAGGTGGAACCGTACGGGGCCATCGGTGGTGGTGGTGCTCCTCCCCCTGCGACGGCGACGAACAAGGTTGTTAAAGCGGTGCCGAAGGTGGACGCCGAGGGAGACGCGAAGAGCGGAGTGCAGAAGTTTCGGGTGAAGCTGTTGGCGGAAAGTGGTGGTCAAAGCATTATTGATGTTCTCTGTCAGATCGGTTTGGATGGAATTCGTATGTTGGATCCAAATACTAGTCGAACATTGAGAATATATCCACTTGAGAACATAACAAGATGTGATAGCTCAGTGGATGTTGAGCCAGGACGAATAAGATTGCTGTCCAATAGATATACTACCAACACACTTTTGGATACAGTTAATGCTGCTACCATACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTTCCGAATCATTGAGAACAAACGAACAGCCTACAGAAAAAAAGAGAGGATTTGGTGATTGGATGAATTTGATTAAACCTGCCGATGAAGAGAAGGATCATTGGGTCCCAGATGAAGCAGTCTTAAAATGTACAGCATGCGGAGTAGATTTTGGGGCTTTTCTTCGCAGACATCACTGTAGGAACTGTGGGGATATTTTTTGTGACAAATGCACACGTGGTAGAATTGCTCTTACTTCTGATGAGGATGCTCTGCAAGTACGAGTTTGTGATCGATGCATGGCTGAAGTGACTCTAAGGCTGAGTAATGCTAAAGAGTCATCAAGTAAACCTGTATTGCAGAGTCATGAGGATCTTGCAAAGAAACTTCAGGATGAGCTAGAAAGGAATAGAAGGATATCAGGCTCTAAGTCTGATGGATCTGGAAGACGAATGAAAGAAGTTGCATGTCCTATTTGCACTGTCCATCTTCAGGTGCAGGTACCAACCTCTGGTTCAGAGACCATCGAGTGTGGAGTTTGTCAGCACCCTTTTCTTGTGACTGCTCGTTGA 1026 0.4669 MWRLHFTLLLPIHHVYGERVLAYYGGKVEPYGAIGGGGAPPPATATNKVVKAVPKVDAEGDAKSGVQKFRVKLLAESGGQSIIDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDSSVDVEPGRIRLLSNRYTTNTLLDTVNAATIQFKEMGGSRRPSESLRTNEQPTEKKRGFGDWMNLIKPADEEKDHWVPDEAVLKCTACGVDFGAFLRRHHCRNCGDIFCDKCTRGRIALTSDEDALQVRVCDRCMAEVTLRLSNAKESSSKPVLQSHEDLAKKLQDELERNRRISGSKSDGSGRRMKEVACPICTVHLQVQVPTSGSETIECGVCQHPFLVTAR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02476 341 CDD PTB 48 116 - -
Gma17g02476 341 PANTHER PROTEIN FREE1 45 340 - -
Gma17g02476 341 Pfam FYVE zinc finger 192 255 IPR000306 GO:0046872
Gma17g02476 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 259 IPR013083 -
Gma17g02476 341 Coils Coil 271 291 - -
Gma17g02476 341 PANTHER PROTEIN FREE1 45 340 IPR045893 GO:0036258|GO:0043130
Gma17g02476 341 SMART fyve_4 188 257 IPR000306 GO:0046872
Gma17g02476 341 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 196 256 IPR017455 -
Gma17g02476 341 SUPERFAMILY FYVE/PHD zinc finger 191 260 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02476 Gma-Chr17 42793688 42802300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02476 174 269 EF-hand Containing Proteins AT3G14270 34.783 1.45e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02476 - - gmx:100788920 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02476 17 42793688 42802300 Gma17g02476 17 42793688 42802300 ECH