LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g02474	ATGATAGCACAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGGTTGGTACTCTTCACTATTCACCGCAGTACTTCCTTACCCTAATTTCTCAATTCTTCGCGATTCTCTCTCTCTCGCAGGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCCGAGCTTCGAACTTCCAGGCTCTCACCTCACAAATACTACCAACTCTATATGAGAGCCTTTGATGAGCTTCGGAGGCTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGCGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTGTATCTCCTTTGCACGGTAGGATCCGTTTACCTCAGATGCAAGGATGCTCCGGTAAAGGATGTTCTTAAAGATCTAGTGGAGATGTGTCGCTCTGTTCAACATCCAATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCTTGATATTGGCTATGAATATGAAGAGGGGGAATCTAATAGTGTGATGGATGCAGTAGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTTGCAGCATCAGGGACCTGCTCGGATAAGGGAGAAGAGGGAAAAAGAAAGGAACGAGCTTCGTGATCTTGTAGGGAAAAATCTACATGTTCTGAGTCAGATAGAGGGCGTGGACCTTGAGATGTACAAAGACACCGTCCTTCCTAGTGTCTTAGAGCAGGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGTTAGGTGCTTGCCCTCAATTGCAGCCAACAGTAGACATCAAGACAGTGTTATCACAGTTAATGGACAGGTTGTCAAATTATGCTGCTTCTAGTACTGAAGTATTGCCCGAATTTCTGCAAGTGGAAGCATTTACCAAATTAAGCACAGCAATTGGCAGGGTGATAGAAGCACAAGTTGACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTGGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATTGTGACTGCCCTGACACTTTCCAATTATCCTCGTGTAATGTATCATCTTGATCATGAAACAAATAAAGTTATGGCCATGGTTATTATCCAAAGCATTATGAAGAATAACACTTGCATCTCTACTGCCGATAAGGTTGAAGTTTTATTTGAACTAATCAAAGGGCTTATAATGGACTTGGATGGAACAACTGTGGATGAGGTTGATGAAGAAGATTTCAATGAGGAGCAAAATTCTGTCGCTCGCCTCATACACATGCTTCATAATGATGAACCAGAGGAAATGTTTAAGATAATATGTACCGTAAAGAAGCATATTATGAGTGGAGGACCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGAGATAATTGAAGCTCTTTCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTATCTGCAATGTGCTGAGTATTCAGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTAAGGATTGCAAATGCTGCTCAACAAATGGCCAATGCAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGCTTCAGCTCTTCCAGCTTCGGATGCCTTTTTTACCAGCACATTGAGGTACATCCAATTCCAAAAACAGAAGGGTGGTATACTGGGTGAAAAATATGATCCCATCAATGTCTCAATCCCTGCCTAA	2286	0.4248	MIAQGFEDEEKWLAEGIAGIQHNAFFMHRALVGTLHYSPQYFLTLISQFFAILSLSQDDNNLRDALKYSAQMLSELRTSRLSPHKYYQLYMRAFDELRRLEIFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDAPVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQVSKDKLLDIGYEYEEGESNSVMDAVEFVLQNFTEMNKLWVRLQLQHQGPARIREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMDRLSNYAASSTEVLPEFLQVEAFTKLSTAIGRVIEAQVDDMPIVGAIALHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDIVTALTLSNYPRVMYHLDHETNKVMAMVIIQSIMKNNTCISTADKVEVLFELIKGLIMDLDGTTVDEVDEEDFNEEQNSVARLIHMLHNDEPEEMFKIICTVKKHIMSGGPRRLPFTVPSLIFSALRLIRRLQGQDGDIVGEEVPTTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANAARGSSGPVTLFVEILNKYIYYFEKGNPQITSSTIQGLIELITTEMQSDSASALPASDAFFTSTLRYIQFQKQKGGILGEKYDPINVSIPA	761

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma17g02474	761	Pfam	Vacuolar protein sorting-associated protein 35	52	615	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Gma17g02474	761	Gene3D	-	496	614	IPR042491	-
	Gma17g02474	761	Gene3D	-	615	742	IPR042491	-
	Gma17g02474	761	PIRSF	Retromer_Vps35	38	617	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Gma17g02474	761	PIRSF	Retromer_Vps35	2	36	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Gma17g02474	761	PIRSF	Retromer_Vps35	612	758	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Gma17g02474	761	PANTHER	VACUOLAR SORTING PROTEIN 35	2	615	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Gma17g02474	761	PANTHER	VACUOLAR SORTING PROTEIN 35	615	757	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Gma17g02474	761	PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A	2	615	-	-
	Gma17g02474	761	PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A	615	757	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g02474	Gma-Chr17	42778474	42787032	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g02474	K18468		-	gmx:100775573	1311.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma17g02474	17	42778474	42787032	Gma17g02474	17	42778474	42787032	ECH