Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02393 ATGTCGATATCAATATCCTTATCCTCAGTTCCCGCGCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACCTTCTACTGTCTCTACAAGTCTCGCCGCTTAAGACACCTTAAACTCTccctaaaccctaaccctaaccctaaccctaaccctaaGATTCTCTTCCTCTCCGAAACAGGCACCGCCAAAACCCTCGCGCGTCGCCTCCACCGGCTCCTTTCCTCCAACGATGTCGCATTCGACCTCGTCGATGCGCAGCACTACGAGCCCGAGGACCTCCCCAAGGAGACGCTCATCCTCCTCGTCGCCTCCACGTGGCAGGACGGCGCTGCCCCCGCCGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGACGCCGCCGCCGACTTCCGCGCCGGCTCCCTTCTCCTCTCCCGCTGCCGCTTCGCCGTCTTCGGCGTCGGGAGCCGGGCCTACGGTGACGACTCCTTCAACGCCGTCGCGAAGGGCCTCGCCATGCACCTGAGGGCACTCGGCGCGACGGAGGCCGTTCCCCTGTCCGAAGGGGACATCGACGGTGGCGATGACGTGGACGCGGTTTTCGATCGGTGGTGTGAGAAGGTGGTGGCGGTTTTGAAAGGCGTTGGTGTTGTGGAAAGCTGTGATAATGATGGTGCTGAGGAATGCGGCGTGGTTTCGAGTTCTGAAGAGGAGTCTGATGTGGAAAGTAGTGAGATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCGCGGCGGAAGGTGGTGGCTAATGGGGAAGAGAGCAATGGGAAGTTGAATGGCAGTAGAGAAATGGTCACTCCGGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATTATTGGGTCGCATAGTGGTGTCAAGCTTTGTAGATGGACCAAGGCGCAGCTTCGAGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATTGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCTTGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTTGGGAAAAGTTGGCAGTGGCAGATGGATGATCCAATAGAGATTGTAAATTCTGCAATAGACCTGCATACAAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTTACCTTGGAGCGATTATCTGAAGGTCTCTCACCACGTCATTGTGCATTATCGCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCACTGAAACCTATCACCCAGTTATATGTAAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTAAAGGAAAAACATCAGCGAACAGTATACCGCCTGACCCTGGTGAAAGGCTGGAATACCGAAGAAGTTGATGCTTATTCTAAGCTCTTTAGTTTAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACATATTGTGGCTCGTCCACTACGTCAAAATTGACAATGGATAATGTCCCTTGGCATGCTGATGTGAAAGCTTTTTCTGAGGCCCTAGCTTTGAAAAGCCAAGGAGAGTATGAAGTTGCATGTGAGCATGCTCACTCGTGCTGTGTCCTCTTAGCAAAAACTAATAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAGAACTTTTGACAGCAGAGATTACATGGCTGCCACACCATCGTGGTCCGTCTATGGATCAGAGGAAGGTGGATTTGATCCAGGACAATTGAGATACAGGAAAGAGAGACATCACAAGTCTACCCGCAATCAAGCAGGAGGTTTTGCGAGAAGTATTATTTCTCATTTTGGTTTGCTAGTATTACAAGTCAGATTTCCCTTTTCTCCCAAAGCATGCTTTCATACAGCCGCTACTATGTTCTGTCAATTTTCCTTAGCAGTCCCTTTCAATTATAAATTTATAATCCATTTTCTATCTGTCCGTTTGACTGAAGACAACTTTGGACCACAATAG 2133 0.4777 MSISISLSSVPARLTLLALFSATTFYCLYKSRRLRHLKLSLNPNPNPNPNPKILFLSETGTAKTLARRLHRLLSSNDVAFDLVDAQHYEPEDLPKETLILLVASTWQDGAAPAASRFFATWLADAAADFRAGSLLLSRCRFAVFGVGSRAYGDDSFNAVAKGLAMHLRALGATEAVPLSEGDIDGGDDVDAVFDRWCEKVVAVLKGVGVVESCDNDGAEECGVVSSSEEESDVESSEIVDLEDIAGKAPSRRKVVANGEESNGKLNGSREMVTPVIRANLEKQGYKIIGSHSGVKLCRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLHTNMIKQMKGVPGVTLERLSEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNTEEVDAYSKLFSLGEPDFVEIKGVTYCGSSTTSKLTMDNVPWHADVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGQWYTWIDYEKFHDLVASGRTFDSRDYMAATPSWSVYGSEEGGFDPGQLRYRKERHHKSTRNQAGGFARSIISHFGLLVLQVRFPFSPKACFHTAATMFCQFSLAVPFNYKFIIHFLSVRLTEDNFGPQ 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02393 710 CDD Radical_SAM 328 504 - -
Gma17g02393 710 Pfam Flavodoxin 53 196 IPR008254 GO:0010181
Gma17g02393 710 Pfam Wyosine base formation 511 574 IPR013917 -
Gma17g02393 710 SUPERFAMILY Flavoproteins 50 204 IPR029039 -
Gma17g02393 710 ProSiteProfiles Flavodoxin-like domain profile. 51 201 IPR008254 GO:0010181
Gma17g02393 710 Gene3D Aldolase class I 256 586 IPR013785 -
Gma17g02393 710 SFLD Radical SAM 268 578 IPR007197 GO:0003824|GO:0051536
Gma17g02393 710 ProSiteProfiles Radical SAM core domain profile. 316 559 IPR007197 GO:0003824|GO:0051536
Gma17g02393 710 SUPERFAMILY Radical SAM enzymes 329 509 - -
Gma17g02393 710 Gene3D - 30 214 IPR029039 -
Gma17g02393 710 PRINTS Flavodoxin signature 52 65 IPR001094 GO:0010181
Gma17g02393 710 PRINTS Flavodoxin signature 100 111 IPR001094 GO:0010181
Gma17g02393 710 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181
Gma17g02393 710 PRINTS Flavodoxin signature 138 148 IPR001094 GO:0010181
Gma17g02393 710 SFLD tRNA wybutosine-synthesizing 268 578 IPR034556 GO:0008033|GO:0051539
Gma17g02393 710 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 8 640 - -
Gma17g02393 710 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 8 640 IPR034556 GO:0008033|GO:0051539
Gma17g02393 710 Pfam Radical SAM superfamily 328 506 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02393 Gma-Chr17 41957906 41963938 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02393 K15449 - gmx:100791920 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02393 17 41957906 41963938 Gma17g02393 17 41957906 41963938 ECH