Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02268 ATGGACCCGTCTATCATGAAGCTTCTAGAAGATGACGAGGATGAAGCAATGCATTCAGGGGTGGATGTGGAAGCCTTCCAGGCTGCCCTAAATAGAGATATAGGAGGAGATGTGTCTACTTCACAATTTTCTGGCTCAGATGCAGTGTTGTCTCAAGGAAGCAATAATACATCAAGTCAATCTTTATCACAGTGGCCTACTTCTAACCATGACAGCCAAACTGACTGTCAAAAGCAAGAATCTAAAACTGCACAACAGCAAGATCAACCTTCATCTGGGGTGGAGCTGAAGCAACATGGATCTCTTGCGGAACAACTACATCATGTTACTTCTCAGGACATAAATAATCCTCATTTATCACAGAAACAATCTCAAGATGAATGTCACCAAGCACCAGCTTTACAAGTTTCCCTCCACAATTCTCAAGCTATTGGAATTCAGAATTCTGGAAAAGATCCAGTTCTTAATAATGAGGTAGTAAAGAATCATAACCCCAGCAGTGAATCTCAGTATGCAAAGTTGCAGCAGATGAGTAATCAACAGGCTACAGTCTCTGAGCAGCCAAGTAGTCAAGGAAATCGTAGTACTAGTAAGCAAGTACCATTTGGCATGTTGCTACCCATCTTGCTTCCTCAACTTGCCAAAGACAGAGCCATGCAACTTCAAACTTTATTTGCTAAATTGAAGAAAGAGGAAATACCGAAAGACAGTTTTGTGCGGCTCATGAAAGGTATCGTAGGGGATCAGATGCTTAGATTAGCATTAGCAAAGGTGCAAGTGCAACCACAGACAAGGCCCAATCAAGCATCTGCTGGGCAGCAGCACCCTATGAGGATGCCAACTGTTGGTTCAGGTGCAAGCCAATTGAATGATCCCCATGCTTTAGCAGAGATGCATCAGAGAAGTATGAATGCTGCCGTTGACCAATCTCGCATGGGTTCTTCAGCTGGCCAAGCTATGGAGAGCAATGCTAGAAAATCTCAGGAACTAGATGTTAAAATAGAATCTCAAGGATTGCAACCAAGCCAATTGACATCTTCCAGTTCCAACAAAATTGCTCAAGAAACAGAAAGAACATCAGTTCACATACAAGGGCTTAATAAGCAGCAGCAACAACATCTACATTTCCCATCAGCATATGGAAATAGTGGTGGTAACTATAACCCTTTTTCTGGGACAACCAGTAGTTCCACTTCATCTATCAAATCACAATCGCATGATTCACATATGAGTCAAATTTCGTATCAAAGTATTGGTTCAAATCATCACTTAGGTGGGTCAACACATGGTTTGAATGTAATTGGTATGTCAAAACTTGAACAGCAGAATTCTTTCAATGACCCCAAGAGACTGCCAGGTGGATCTGTGTCTCCTGCTGTAAACAATACAGTGTCTCAACAAACTAAAAATGCTTGGCAACCATCAACAAACAAAGAACAAAATCTGGGCTTATTGTCATCTGTTTCTTATGTCAAAAAGGAACCTAGTGACTTGTCTACTGAGCAGCAAAATAGGCATAATTTGTCTAAATTGCATGGGTATTCTTCTGTTAATTCTGCTCAGCTTGAACAGGGTGGTGCTAGTCAAGGAACTGTAAAGGATGAATTTTCAAGAGGTCTTCCAGCACCCCCAAGCAAGCCTCCTACATCTACTGGCTTGCTGCCACAAAGTTCTTCTTCCCCTTCTGTAATGACCCAACTAGGCCCGGGTGTCTCGCTAAGCACTCAGATCCCATCAAATGCTTCTGGAATTGGTGCAAGGACATCTCTTAAAAAGCCTGCTGCTGCCCAAAAGAAACCACATGAAGCACTTGGTTCCTCACCTCCTCCTGCAAATAAAAAACAAAAAACTTCTGGGGGATCTGTAGAACAAAGCATTGAACAACTTAATGATGTCACTGCTGTTAGTGGAGTTGACCTCAGGGAAGAGGAAGAGCAGTTATTTTCAGGGCCCAAAGAGGATAGTCGAGTGTCAGAAGCTTCTCGAAAGGCTGTGCAAGAAGAAGAGGAAAGGCTGATCTTGCAGAAAGCTCCATTGCAAAAAAAATTAATTGACATCATGGCCAAGTGTGGCTTGAAGGGTATGAGCAATGATGTGGAGAAATGCTTGTCACTGTGTGTGGAGGAAAGGATGCGTGGGCTGATAAGTAACCTGATTAGAATATCAAAACAGAGGGTTGATTTTGAGAAAACAAGACATCGGACTGTTGTCACTTCAGATGTTCGGCAGCAAATCATGACAATAAATAGGAAAGTAAGGAAAGAGTGGGATATAAAACAGGCAGAAGCAGAGAAGATTAGGAAACTACATAATGTTGACAGCAATACTGGAGTTGATGGTGACAAGGAGAAGGACGACGGCCGTGGTAAATCAACAAAGGTGAACAAGGAAGAGGATGAGAAGATGAGGACAAATGCTGCAAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGATGTCAAAATGGCAACTTATGGCTGAGCAAGCCAAGCAGAAACGTGAAGGGGGGGTGGATGTGTCATCTGGTTCTCAACCAGCTAAAGATGTGAACCGCAAATCTTTATCAACATCTGGAAGAAGTACAAAGGATAATCAGGAAGGGGAGAAAAAAGGTTCATCTACTTTTATAGCAAGTTCAGTGGCTAGAAAACTTGGGAGGAGTCATGCCATGGCATCTCAAACTAGAGTAGCTCGAAGCATCTCTGTAAAGGATGTGATTGCAGTCCTGGAGAGGGAACCCCACATGTCTAAATCTCCACTCATTCATCGCTTGTACGAGAGAATTCATTCTGATGCCCCAGTTTAA 2811 0.4276 MDPSIMKLLEDDEDEAMHSGVDVEAFQAALNRDIGGDVSTSQFSGSDAVLSQGSNNTSSQSLSQWPTSNHDSQTDCQKQESKTAQQQDQPSSGVELKQHGSLAEQLHHVTSQDINNPHLSQKQSQDECHQAPALQVSLHNSQAIGIQNSGKDPVLNNEVVKNHNPSSESQYAKLQQMSNQQATVSEQPSSQGNRSTSKQVPFGMLLPILLPQLAKDRAMQLQTLFAKLKKEEIPKDSFVRLMKGIVGDQMLRLALAKVQVQPQTRPNQASAGQQHPMRMPTVGSGASQLNDPHALAEMHQRSMNAAVDQSRMGSSAGQAMESNARKSQELDVKIESQGLQPSQLTSSSSNKIAQETERTSVHIQGLNKQQQQHLHFPSAYGNSGGNYNPFSGTTSSSTSSIKSQSHDSHMSQISYQSIGSNHHLGGSTHGLNVIGMSKLEQQNSFNDPKRLPGGSVSPAVNNTVSQQTKNAWQPSTNKEQNLGLLSSVSYVKKEPSDLSTEQQNRHNLSKLHGYSSVNSAQLEQGGASQGTVKDEFSRGLPAPPSKPPTSTGLLPQSSSSPSVMTQLGPGVSLSTQIPSNASGIGARTSLKKPAAAQKKPHEALGSSPPPANKKQKTSGGSVEQSIEQLNDVTAVSGVDLREEEEQLFSGPKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVEKCLSLCVEERMRGLISNLIRISKQRVDFEKTRHRTVVTSDVRQQIMTINRKVRKEWDIKQAEAEKIRKLHNVDSNTGVDGDKEKDDGRGKSTKVNKEEDEKMRTNAANVAARAAYGGDDMMSKWQLMAEQAKQKREGGVDVSSGSQPAKDVNRKSLSTSGRSTKDNQEGEKKGSSTFIASSVARKLGRSHAMASQTRVARSISVKDVIAVLEREPHMSKSPLIHRLYERIHSDAPV 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02268 936 Pfam Transcription initiation factor TFIID component TAF4 family 629 925 IPR007900 GO:0005669|GO:0006352
Gma17g02268 936 MobiDBLite consensus disorder prediction 828 876 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 146 198 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 443 480 - -
Gma17g02268 936 CDD TAF4 624 925 IPR007900 GO:0005669|GO:0006352
Gma17g02268 936 MobiDBLite consensus disorder prediction 372 407 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 551 586 - -
Gma17g02268 936 ProSiteProfiles RST domain profile. 193 264 IPR022003 -
Gma17g02268 936 MobiDBLite consensus disorder prediction 35 100 - -
Gma17g02268 936 Gene3D Histone, subunit A 674 719 IPR009072 GO:0046982
Gma17g02268 936 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 39 931 IPR045144 GO:0005669|GO:0006352
Gma17g02268 936 MobiDBLite consensus disorder prediction 263 289 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 769 804 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 845 863 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 521 624 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 610 624 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 304 330 - -
Gma17g02268 936 MobiDBLite consensus disorder prediction 263 288 - -
Gma17g02268 936 PANTHER IP01149P-RELATED 39 931 - -
Gma17g02268 936 Pfam RCD1-SRO-TAF4 (RST) plant domain 195 259 IPR022003 -
Gma17g02268 936 MobiDBLite consensus disorder prediction 304 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02268 Gma-Chr17 40574970 40584909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02268 K03129 - gmx:100783067 1790.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02268 17 40574970 40584909 Gma17g02268 17 40574970 40584909 ECH
Gma17g02268 17 40574970 40584909 Gma14g00767 14 7879891 7889025 GST