Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02214 ATGGCTTCTTCTTCTCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACGGCGGCGTCGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCGAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACTTGTGCCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCGTTTCCGGATGCTGTCTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGGTAGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATCACCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTCGCAGTTCGTGGTGTCTTGTATTGCCGATGTTTCTGTTTGAACAGTAACAATTTTGCTGATTGGCCATCTCTACCTCCGATTCCAGTAGATAACCTGAATGCTGATGGAAGTGATCCCAAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCAGTGAAGGAGAGGCACTATTAG 1002 0.4641 MASSSPSHSYLTHLPLHPSHQGDSEKRVEDDESRVPIHIVTAASQLPVEFLEPSPQSKLVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGSKSYDEKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVRGVLYCRCFCLNSNNFADWPSLPPIPVDNLNADGSDPKEEILSVLDIPQGKMGLVIGKRGATILSIKQSCNAEILTGGPKGPPDKVFIIGPVKERHY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02214 333 Pfam 3'-5' exonuclease 55 226 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gma17g02214 333 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 274 329 IPR036612 GO:0003723
Gma17g02214 333 Pfam KH domain 281 329 IPR004088 GO:0003723
Gma17g02214 333 Gene3D - 2 242 IPR036397 GO:0003676
Gma17g02214 333 CDD Egl_like_exo 50 246 - -
Gma17g02214 333 PANTHER - 3 330 - -
Gma17g02214 333 SUPERFAMILY Ribonuclease H-like 6 234 IPR012337 -
Gma17g02214 333 PANTHER EGALITARIAN, ISOFORM B 3 330 - -
Gma17g02214 333 MobiDBLite consensus disorder prediction 1 31 - -
Gma17g02214 333 SMART 35exoneu6 37 227 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gma17g02214 333 ProSiteProfiles Type-1 KH domain profile. 276 310 - -
Gma17g02214 333 CDD KH-I 281 329 - -
Gma17g02214 333 Gene3D K Homology domain, type 1 265 331 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02214 Gma-Chr17 39854817 39861976 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02214 K18740 - gmx:100788577 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02214 17 39854817 39861976 Gma17g02214 17 39854817 39861976 ECH
Gma17g02214 17 39854817 39861976 Gma14g00834 14 8919383 8926471 GST