Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02202 ATGGCCGACGAATCTCAATATTCGGCTAACCCCGACAGCACCCCTACCCCTCCCTCCCTCAAGCGCAAGTACAACGACGACCACCGCCCTACTGGATTCTCCGACGGCCCCGACCCGGCGGCGCCGCCACCCCCCTCCTACAACAACGTCCCTCCCCCTTCCTCCGCCGCCTCCGACTTCGAGCTCGCCAAACAGCGCGCCCAAGAAGTCGCCGCTCGCCTCCTCAGCGGCGCCGCTCCCCTCGACCCCACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCGATGTGAAGGGTCCaTACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATACTCGTACCAGGGTGGTGGTGCGAGCAAGAAGATTGACATTCCCAATGGGAGGGTTGGTGTTATCATTGGAAAGGGTGGTGAGACCATCAAGTACCTTCAGCTGCAGTCTGGTGCCAAAATTCAAGTCACTCGTGATATGGACGCTGATCCGAATTCGGCTACTAGGACTGTTGAGCTTATGGGTTCTCCTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGGCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCTAGGCCACCGACTAGCTGGGGTCCCCCTGCTGCTCCAATGCAACAATCTGGTTATGGCTATGTGCAGCCAGGAGCATACTCTGGTCCACCCCAGTATAACGTGCCTCAGCAACCATATGCAGGCTATCCTCCCCAGTCATCTGGTGGATATTCCGCCGCCAACTGGGATCAGTCCACTGCCCCACAGCAGCAGTCTGCCCATGCCGGGTATGATTACTATAGTCAACAGCAGCAGCAGCAAAATCCTGCACCTCCATCCGATGGGACTGCTTACAATTACAGCCAACCACCTTCCTCTGGTTATAGCCAACCGGGGCAGGGCTATGCTCAGGATGGCTATGGTGGATATCATGCGCCACCTCAATCAGGGTATGGTCAGCCACCATCATATGATCAGCAGCAAGGTTATAGCTCAGCTGCTAGCTATGGTAGCAACCCAGCCCCAGAGGGCCACACTGCCAATTACGGATCCCAAGGGGATTCAACCCAAGCTCCACCTGCCCAGCCTCCAAGTCAAGGTTATGGGACTGGCCAACAACCTAGCCCAAATGCTGCCAACTATGCACCACAAGCTCAACCAGGTTATGGGGTGCCCCCAACCTCCCAGCCGGCTACTTATGGCAGTCAACCTCCAGCACAGTCTGGTTATGGATCTGGCTATGGACCCCCTCAGACCCAAAAGCCTAGTGGCACACCTCCTGTGTATGGACAATCCCAATCACCTAACACAGCAGGGGGATATGGTCAATCTGGTCATTTGCAATCTGGATATCCTCCTTCCCAGCCTCCACCTTCGGGAGGATATGCCCAACCAGAATCAGGTTCTCAAAAAGCTCCACCATCTGGTTATGGTGGTGCAGTGCAGCCAGGGTATGGTCCCCCGTCATATGGTGGTGCCCCAGCAGGTGGTCAACCTGGTTATGGCCAGGCTCCTCCATCGTACAGCAACAGTTCTTATGGTGCTGCTGGTTACGCTCAGCCTCCAGTATATTCCAGCGATGGTAATGTAGGTGGGACTACTCGTGGAGCCTATGATGGAGCACCTGCACAGCCTGTTCAACAGGCTGCTAAAACGTCTCCTCAGTTGATATAG 2019 0.5399 MADESQYSANPDSTPTPPSLKRKYNDDHRPTGFSDGPDPAAPPPPSYNNVPPPSSAASDFELAKQRAQEVAARLLSGAAPLDPTKRPKHDNNGSSFDSIDVKGPYSVPSISPSAVSYSYQGGGASKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVELMGSPDAIATAEKLINEVLAEAETGGSGIVARRVAGQAGSDEYVSKIPNNKVGLVIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIEGTPEQIESAKQMVNQVISGENRQRNPSMSGGYSQQGYQARPPTSWGPPAAPMQQSGYGYVQPGAYSGPPQYNVPQQPYAGYPPQSSGGYSAANWDQSTAPQQQSAHAGYDYYSQQQQQQNPAPPSDGTAYNYSQPPSSGYSQPGQGYAQDGYGGYHAPPQSGYGQPPSYDQQQGYSSAASYGSNPAPEGHTANYGSQGDSTQAPPAQPPSQGYGTGQQPSPNAANYAPQAQPGYGVPPTSQPATYGSQPPAQSGYGSGYGPPQTQKPSGTPPVYGQSQSPNTAGGYGQSGHLQSGYPPSQPPPSGGYAQPESGSQKAPPSGYGGAVQPGYGPPSYGGAPAGGQPGYGQAPPSYSNSSYGAAGYAQPPVYSSDGNVGGTTRGAYDGAPAQPVQQAAKTSPQLI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02202 672 MobiDBLite consensus disorder prediction 434 497 - -
Gma17g02202 672 MobiDBLite consensus disorder prediction 1 20 - -
Gma17g02202 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 220 290 IPR036612 GO:0003723
Gma17g02202 672 SMART kh_6 122 195 IPR004087 GO:0003676
Gma17g02202 672 SMART kh_6 214 288 IPR004087 GO:0003676
Gma17g02202 672 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 64 666 - -
Gma17g02202 672 CDD KH-I 221 283 - -
Gma17g02202 672 ProSiteProfiles Type-1 KH domain profile. 123 190 - -
Gma17g02202 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 126 200 IPR036612 GO:0003723
Gma17g02202 672 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 64 666 - -
Gma17g02202 672 MobiDBLite consensus disorder prediction 291 672 - -
Gma17g02202 672 Gene3D K Homology domain, type 1 115 217 IPR036612 GO:0003723
Gma17g02202 672 MobiDBLite consensus disorder prediction 36 51 - -
Gma17g02202 672 MobiDBLite consensus disorder prediction 338 415 - -
Gma17g02202 672 MobiDBLite consensus disorder prediction 1 100 - -
Gma17g02202 672 Pfam KH domain 221 284 IPR004088 GO:0003723
Gma17g02202 672 Pfam KH domain 127 192 IPR004088 GO:0003723
Gma17g02202 672 CDD KH-I 125 190 - -
Gma17g02202 672 MobiDBLite consensus disorder prediction 291 311 - -
Gma17g02202 672 MobiDBLite consensus disorder prediction 504 565 - -
Gma17g02202 672 Gene3D K Homology domain, type 1 220 290 IPR036612 GO:0003723
Gma17g02202 672 ProSiteProfiles Type-1 KH domain profile. 222 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02202 Gma-Chr17 39744301 39750081 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02202 K13210 - gmx:100782717 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02202 17 39744301 39750081 Gma17g02202 17 39744301 39750081 ECH