Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02194 ATGAGTTCCACCATAGCCACGGATTCCCATggtttgtcagattcttggacaataggGGAGCGCGTGTGTGCGGCGTTGATGCCACTCATAGCGGTGGTTGAGGTTTTGATTTTGACTGTGACAGGTTGTTTCAGCTATTGCCCATGCATCAGCATTATTGATCAGAACCATAAATGTACCTATACTGCTAAGGACTTCGCAATCCTTGCTGATGAAACCAGATTTACAGTTGAAGAAGTGGAGGCATTGCATGTGTTGTTTAAAAGGTTAAGTAGCTCCCTGATTGATGATGACTCGATTCACAAGGAGGAGCTTCAATTGGCACTGTTTCAGACCCCATATGGGAAAAATCTTTTCCTAGATCGAGTTTTTGATGTTTTCGACCAAAAAAGAAACGGTGTAATCGAGTTTGACGAATTTGTCCACGCCCTCAGTGTTTTCCATCCATATGCCCCCATGGATGAAAAAATTGATTTTGCATTTAAGCTCTATGACTTGAGGCAAACTGGGTTTATCGAGCCAGAGGAAGTCAAGCTAATGGTTGTAGCCATTTTGATAGAATTTGACATGAATCTTCCTGATGATCTTCTTGAAGCAATTGTTCACAAGACAATTGCTGATGCGGATAAAGATAATGATGGTAAAATCAGTAGAGAAGATTGGAAAGCTTTTGTGAGCCGAAATCCATCCCTCTTGATAAACATGACACTTCCTTATTTGAAGGATATCACCAGTGTGCTTTCGAGTTTTGTTTTCAAAACGGAGGCAAAACCTTGA 777 0.399 MSSTIATDSHGLSDSWTIGERVCAALMPLIAVVEVLILTVTGCFSYCPCISIIDQNHKCTYTAKDFAILADETRFTVEEVEALHVLFKRLSSSLIDDDSIHKEELQLALFQTPYGKNLFLDRVFDVFDQKRNGVIEFDEFVHALSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKLMVVAILIEFDMNLPDDLLEAIVHKTIADADKDNDGKISREDWKAFVSRNPSLLINMTLPYLKDITSVLSSFVFKTEAKP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02194 258 Pfam EF hand 120 145 IPR002048 GO:0005509
Gma17g02194 258 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Gma17g02194 258 SMART efh_1 200 228 IPR002048 GO:0005509
Gma17g02194 258 SMART efh_1 119 147 IPR002048 GO:0005509
Gma17g02194 258 SMART efh_1 156 184 IPR002048 GO:0005509
Gma17g02194 258 Pfam EF-hand domain pair 155 224 IPR002048 GO:0005509
Gma17g02194 258 Gene3D - 65 258 - -
Gma17g02194 258 ProSiteProfiles EF-hand calcium-binding domain profile. 196 231 IPR002048 GO:0005509
Gma17g02194 258 CDD EFh 156 226 IPR002048 GO:0005509
Gma17g02194 258 PANTHER CALCINEURIN B-LIKE PROTEIN 10 11 256 - -
Gma17g02194 258 SUPERFAMILY EF-hand 68 242 IPR011992 -
Gma17g02194 258 PANTHER CALCINEURIN B 11 256 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gma17g02194 258 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Gma17g02194 258 PRINTS Recoverin family signature 123 144 - -
Gma17g02194 258 PRINTS Recoverin family signature 170 188 - -
Gma17g02194 258 PRINTS Recoverin family signature 216 236 - -
Gma17g02194 258 ProSitePatterns EF-hand calcium-binding domain. 209 221 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02194 Gma-Chr17 39639998 39644349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02194 76 251 EF-hand Containing Proteins AT5G24270 65.909 1.46e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02194 K06268 - gmx:100810494 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02194 17 39639998 39644349 Gma17g02194 17 39639998 39644349 ECH