Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02189 ATGGAACGTGCTCGCAGGCTTGCAAACCGCGCCATTCTGAGGCGTCTGGTTTCAGAGGCAAAGCAGCATCAGAAGAATGAATCCGTGCTGCACTCTTCCACCACCCCCATACTGCTCTACTCTTCCTCCAGGTGCATGTCCTCTGTTTCCTCCCCTGTTCTTCGAAGCAGGGGATCCAAAACAGAGACCCTTCTGGGAAGAAACATGAACATATCACGCAGCGTTGTTGCTGGTGCTGGTTCCGCCCGATCCATCTCGGTTGAAGCGCTTCAACCGAGTGACACTTTCCCCCGGCGCCACAACTCTGCCACACCCGAGGAACAGAGCAAGATGGCAGAGTCGATTGGATTCGAGAGCCTCGACTCCCTCGTGGACGCCACGGTGCCTAAATCGATCCGCTTGAAGGAAATGACATTCGGGAAATTCGATGCAGGGCTTACAGAGAGCCAGATGATAGAGCACATGAAGGACTTGGCCTCAaagaacaaggtttttaagtcctacattggcatggggtactataacactcatgttccaccagtgatcctgaggaacataatggagaaccctgcttggtacactcagtacacaccttaccaggctgagatatctcaggggaggcttgagtcattgctgaattaccaaaccatgatcaccgacctcaccggcttgcctatgtcgaatgcttcattgcttgatgagggtactgctgctgctgaagcaatgtctatgtgtaataatattcagaaagggaagaagaagaccttcattattgcaagtaactgccaccctcagacaattgatatttgcaagacaagagctgatggttttgatctcaaggttgtgacagcagatcttaaggacattgattacaagtctggggatgtttgtggtgtgcttgtgcagtaccctggcactgagggagaggttttggactatggagagtttgtgaagaaggctcatgctcatgaggtgaaggttgttatggcaagtgatttgttggcactgactgtgttgaagcctcctggggagtttggggcagatattgttgttggctcggctcagaggttcggggtgccaatggggtatggagggcctcatgcagctttcTTGGCCACTTCACAAGAGTACAAGAGGATGATGCCTGGGAGAATCATCGGGGTCAGTGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTGTATCATGGACCCGAAGGCCTGAAGAACATTGCACACCGTGTTCATGGTCTTGCTGGGGCATTTGCTCTTGGATTAAAGAAACTTGGAACTGTGGAAGTTCAGGACCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTTCTAATGCACATGCAATTGCTGATGCTGCTCTCAAGAGTGGAATAAATTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAATCTTTTCAAAGTTTTTGCTGGTGGAAAGCCGGTCCCCTTCACTGCTGCATCTCTTGCACCAGAAGTTCAGAGTGCGATTCCTTCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAAAGATCTCTCACTATGCCACAGTATGATTCCACTTGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGGAAATGTTCAATAATTTGGGTGAACTGTTGTGCACCATCACTGGGTTTGACTCCTTCTCCTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCCGGACTTATGGTTATTCGTGCATATCATTTGGCAAGGGGAGACCACCACCGCAATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCAACATGAATGCTCAGGTGGGACTCACAAGCCCAGGTTGGATAGGAGCAGATGTATGCCATCTCAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACCATCGCTGCCGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACACTTACATAGCCATGATGGGTTCTAAAGGACTCACCGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACCTGAGAGGCTTTAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAGCGCCTCATGGACTACGGTTTTCATGCACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCAACTGAGAGTGAAAGCAAGGCTGAACTAGACAGGTTCTGTGATGCTCTTATTTCCATTAGACAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTCCTTGGCTCCGTGCTTCAAAGTTCTGGCCTACCACAGGACGTGTTGATAATGTGTACGGTGACCGCAACCTGATTTGCACCCTTCTGCCAGCATCACAGGCTGTTGAAGAACAAGCTGCTGCCACAGCATAG 3171 0.3784 MERARRLANRAILRRLVSEAKQHQKNESVLHSSTTPILLYSSSRCMSSVSSPVLRSRGSKTETLLGRNMNISRSVVAGAGSARSISVEALQPSDTFPRRHNSATPEEQSKMAESIGFESLDSLVDATVPKSIRLKEMTFGKFDAGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFVKKAHAHEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIAHRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKVKTSNAHAIADAALKSGINLRVVDGNTITVAFDETTTLEDVDNLFKVFAGGKPVPFTAASLAPEVQSAIPSGLVRKSPYLTHSIFNMYQTEHELLRYLYKLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPVDQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIATGGIPAPDKPQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNADINNNVLKSAPHPPSLLMADAWTKPYSREYAAFPAPWLRASKFWPTTGRVDNVYGDRNLICTLLPASQAVEEQAAATA 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02189 1056 CDD GDC-P 148 525 IPR020581 GO:0004375|GO:0006546
Gma17g02189 1056 SUPERFAMILY PLP-dependent transferases 99 526 IPR015424 -
Gma17g02189 1056 TIGRFAM gcvP: glycine dehydrogenase 99 1040 IPR003437 GO:0004375|GO:0006544
Gma17g02189 1056 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 90 1047 IPR003437 GO:0004375|GO:0006544
Gma17g02189 1056 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1056 - -
Gma17g02189 1056 Gene3D - 607 833 IPR015421 GO:0003824
Gma17g02189 1056 Gene3D - 179 439 IPR015421 GO:0003824
Gma17g02189 1056 Coils Coil 715 735 - -
Gma17g02189 1056 Pfam Glycine cleavage system P-protein 99 525 IPR020581 GO:0004375|GO:0006546
Gma17g02189 1056 Pfam Glycine cleavage system P-protein 542 818 IPR020581 GO:0004375|GO:0006546
Gma17g02189 1056 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1056 IPR020581 GO:0004375|GO:0006546
Gma17g02189 1056 SUPERFAMILY PLP-dependent transferases 547 1041 IPR015424 -
Gma17g02189 1056 CDD GDC-P 568 963 IPR020581 GO:0004375|GO:0006546
Gma17g02189 1056 Gene3D Aspartate Aminotransferase, domain 1 855 994 IPR015422 GO:0003824
Gma17g02189 1056 Gene3D Aspartate Aminotransferase, domain 1 168 521 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02189 Gma-Chr17 39578478 39585061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02189 K00281 - gmx:100777528 2083.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02189 17 39578478 39585061 Gma14g00859 14 9224202 9230893 GST
Gma17g02189 17 39578478 39585061 Gma04g00472 04 4214927 4216640 PCT
Gma17g02189 17 39578478 39585061 Gma06g00466 06 3973685 3975122 PCT
Gma04g00472 04 4214927 4216640 Gma17g02189 17 39578478 39585061 PCT
Gma06g00466 06 3973685 3975122 Gma17g02189 17 39578478 39585061 PCT