Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02080 ATGTTGCTAAGAAACCCTTCTTTATACACAAACCCAGAACCCTGCCAGCACCTTGCTGAGTACAAGCTCAAGCATGGCTTCGATGGCTACAAAGCCATCCAAAAGCTCCTTGTGATTTCTCCAATTGGGAAAGCCAGTGTCAAGAAACCCAACACAAAGGTACCCAGATGCGGTTTCTGTAATGGGTGTGAAGGGAGATTCTATCTATGCCTGATTTGTTCTTCATTTTCATGTTTGGATCACACCCTTTTGCACCCTCAATCAGAAACAGGTCATGCTGTCTTTGTGGACATTGAAAGGGCTGAACTTTTTTGTGGGGTGTGCCGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCATTGGGGGTGGCAAGTGGTGTCACTGGGAATGAAAGCATTGGCCAGAGATTGATCAAGAGGAGGAGATTGGCTTCTGGTGTTGTTGGATTGGATTTGCAGAAATCTAAGTGTAGAGTTTCCACCAAAGATCTGAGGGAAAAATCGTGTTACCCTGTGGGGTTGAGGGGGTTGAACAATCTTGGTAGCACGTGCTTCATGAATTCGGTGTTGCAAGTGTTGCTAAATGCACCTCCTTTCAGGGACTATTTCCTGAGTGGTGGACACCGGTTGGAGGCTTGTCATCACAGAAGAACCGCGGATCTGATGTGTTGTTTGCTTTGTGATGTCAATGCTATTTTTTCGGCTGCGTATTCGGGGGATCGGAGTCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCATGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGAGCAAAACAAGGAATGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAAGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGCATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGATACCAATGTCTCTTCAACAGAAAAGGGTAAAAAACTTACCAAACAAAATGAGGATGGCAGTATGTCTACACTTTTTGGTTGTTTAGATTTATTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCGGAATTGTCGGGAAAGGCAGGACTCGTTGAAGCAAATGTCTATTAGAAAGCTTCCATTAGTACTTAGTTTGCATGTAAAACGATTTGAACACTCCTTTGTTAAAAAGTCTTCAAGAAAAATAGATCGCTACCTACACTTCCCATTTTCCTTAGATATGTCCCCATATCTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTTTAATTTTGGGGGTGATCAATCAGATATGTTTTCTGAGTTTGAGATTTTTGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTTCTTTCGTGCGTTTAAGGAATCAGTGGTACAGATGTGATGATGCTTGGATAACTGTGGTTGATGAGGCTACAGTCAGAGCCTCACAGTGTTACATGATTTTTTATGTGCAAAAGTTGCAGCACAATAAAGCAAATGAAGACCCGAGTCATGTGCCAAATTCCCCCGGAAGAGAGCTATTTCTTCCTATTGCTGGATTTTGCTAG 1668 0.4335 MLLRNPSLYTNPEPCQHLAEYKLKHGFDGYKAIQKLLVISPIGKASVKKPNTKVPRCGFCNGCEGRFYLCLICSSFSCLDHTLLHPQSETGHAVFVDIERAELFCGVCRDQLYDPDFDQVVMSKHSLGVASGVTGNESIGQRLIKRRRLASGVVGLDLQKSKCRVSTKDLREKSCYPVGLRGLNNLGSTCFMNSVLQVLLNAPPFRDYFLSGGHRLEACHHRRTADLMCCLLCDVNAIFSAAYSGDRSPYSPAQFLYSWWQHSANLACYEQQDAHEFFISMLDAIHEKESKTRNGSKGNGDCQCIAHKVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTNVSSTEKGKKLTKQNEDGSMSTLFGCLDLFTRPEKLGSDQKLYCRNCRERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKSSRKIDRYLHFPFSLDMSPYLSSSILRARYGNRIFNFGGDQSDMFSEFEIFAVVTHSGTLESGHYVSFVRLRNQWYRCDDAWITVVDEATVRASQCYMIFYVQKLQHNKANEDPSHVPNSPGRELFLPIAGFC 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02080 555 Pfam Ubiquitin carboxyl-terminal hydrolase 182 523 IPR001394 GO:0004843|GO:0016579
Gma17g02080 555 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 551 - -
Gma17g02080 555 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 526 IPR028889 -
Gma17g02080 555 SUPERFAMILY Cysteine proteinases 177 524 IPR038765 -
Gma17g02080 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 130 IPR013083 -
Gma17g02080 555 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 116 IPR001607 GO:0008270
Gma17g02080 555 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Gma17g02080 555 ProSiteProfiles Zinc finger UBP-type profile. 37 131 IPR001607 GO:0008270
Gma17g02080 555 SUPERFAMILY RING/U-box 14 119 - -
Gma17g02080 555 Gene3D Cysteine proteinases 176 533 - -
Gma17g02080 555 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02080 Gma-Chr17 38039863 38043657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02080 182 523 Miscellaneous Gene Families AT2G24640 30.000 2.57e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02080 K11366 - gmx:100789632 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02080 17 38039863 38043657 Gma14g01023 14 12478941 12482416 GST