Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02032 atggctcacctcgacaaggacctcactctcttggtcttgcagtactttaatgaagaaaatttgaaggaagcagcacgcacgcttgggcatgaaagtggattatactttgacttgaaatattttgaggacatagtgcttgagggaaagtgggatgagactgagaactatctttcagcgttcacaaaggtcatggataacaaattctcaatcaaaatgtactttgaattgaggaaacaaaaatactTTGAGGCTTTGGAAGTTAACGATCATCACAAGGCCCTAGATATCCTTCTGAAGGATCTAAAAGTCTTCGCCAATGGGAATGAAGCGTTGTTCAAGGACCTTAGTTACTTTCTGATTGTTGATAATATAAGGAACCTTAAACCATCATATGGAGATGTAAATTCTGCAAGAAAGGATTTGATGGTTGAACTCAAGGAAATTATAACTCATCATCCTCTTTTACGTGGAAAACTAAAATTTCCAATCATTGAAAGCCATAATAGGCTATGCTATCTTCTCAATCAAAGTTTTCACTCTATTTTCTTAATTTCATTATTTGAAGTTCATATGCTACACTTCATCATGTTTGCCTGGCCTTCACATTGGCTTCAAAATCCTAATCAAGAGCCAGACCTTTTAATGGACTATTGTAATTCCGAAGCATCTACATCTGCTCCAAAAAATTCAGGAACAACTATGGAGTGGAAACCTTCAACCAATGGAAGGCCAATTAATATGGATTTAGATGAGGTTAGTTGGATAAAACCGAAACCTATACCAAGAAATCTATTTGAGATTTGCACACCATCTCAGTGTCAGTTCTTGAAGCTCCCTATGCATCCCGAAGCAACAAAGATATTAAGATTGGCTTACTGTAATATGGGAGATTCCATTGTGGCATTAGCATCCAATGGTATCCATCTAGTTTGGCGCTGGCCACGTAATGGCTTTAACTTGGATGGCAAGGCTAGTGCACAATTTTGCTCTCAATTGTGGCACCCAAAGGACGGCCCGCAATTCATGATCAACGAACTTTTAAGTATCAAATGTGTAAACCCAGCTTCCTGTTTTGCTTATTCAAATGGATATATCATTTCAACATCAGGAGGGATGGTTTCCTTGTTTAATACTGTGACATTTAAGACTCTGACAACTATAATGTCACCACCACCTATGGTAACATCTCTTGCCTACTATCCCAAAGATAACAACATATTTGGTATTGGCTTTGATGACTCCACTATACTTatataccatgtccgtcaagctgaggttctattcaagcttgagggtcactctacaagagttactgctatagccttctcatattcttcaaatattcttgtatctggagatgcaaatgcccagATTATTCTATGGAATACAGATGGGTGGAAAAAGCTGAAAGATAAGCAATTACAAATACAAGGAAACCAGGTGTCAGTATGTGAAACTCAAATTCAATTTCACCCTGATCAGATAAACTTCCTTGTTGTACACCGTAGTCATCTTGCAATTTATGAAGCAACAGAACTAAAATGTGTCAACCAGTGGCTTCCAGAAGTTCCAATCCTTATCTCTCAAGCAACATTCTCATCTGATGGTCACACTGTGTATTCCATTTTTGGTGATGGGGCTGTGGCAATATTTGATGCTTCAAATTTTGAAATTCGTTGTAGGGTCTATCGGTCTTGTTATCTTCCTACAATTTCAAGATGGGGAGTCTACCCAATTTCTGTAGCTGCACATCCACAAAAACCAGCCCAGTTTGCTGTGGGGCTCTCAGATGGGAGTGTTTATGTGTTTGAGCCTCAAATGCCTGGGGGTGATTGGATCAAAAATCATTGA 1851 0.3106 MAHLDKDLTLLVLQYFNEENLKEAARTLGHESGLYFDLKYFEDIVLEGKWDETENYLSAFTKVMDNKFSIKMYFELRKQKYFEALEVNDHHKALDILLKDLKVFANGNEALFKDLSYFLIVDNIRNLKPSYGDVNSARKDLMVELKEIITHHPLLRGKLKFPIIESHNRLCYLLNQSFHSIFLISLFEVHMLHFIMFAWPSHWLQNPNQEPDLLMDYCNSEASTSAPKNSGTTMEWKPSTNGRPINMDLDEVSWIKPKPIPRNLFEICTPSQCQFLKLPMHPEATKILRLAYCNMGDSIVALASNGIHLVWRWPRNGFNLDGKASAQFCSQLWHPKDGPQFMINELLSIKCVNPASCFAYSNGYIISTSGGMVSLFNTVTFKTLTTIMSPPPMVTSLAYYPKDNNIFGIGFDDSTILIYHVRQAEVLFKLEGHSTRVTAIAFSYSSNILVSGDANAQIILWNTDGWKKLKDKQLQIQGNQVSVCETQIQFHPDQINFLVVHRSHLAIYEATELKCVNQWLPEVPILISQATFSSDGHTVYSIFGDGAVAIFDASNFEIRCRVYRSCYLPTISRWGVYPISVAAHPQKPAQFAVGLSDGSVYVFEPQMPGGDWIKNH 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02032 616 PANTHER TOPLESS-LIKE PROTEIN 1 614 - -
Gma17g02032 616 Pfam WD domain, G-beta repeat 427 462 IPR001680 GO:0005515
Gma17g02032 616 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 614 IPR027728 GO:0006355
Gma17g02032 616 Gene3D - 276 609 IPR015943 GO:0005515
Gma17g02032 616 SMART ctlh 34 92 IPR006595 -
Gma17g02032 616 SMART Lish 4 36 IPR006594 GO:0005515
Gma17g02032 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 430 462 - -
Gma17g02032 616 SUPERFAMILY WD40 repeat-like 352 605 IPR036322 GO:0005515
Gma17g02032 616 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Gma17g02032 616 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Gma17g02032 616 SMART WD40_4 380 420 IPR001680 GO:0005515
Gma17g02032 616 SMART WD40_4 564 604 IPR001680 GO:0005515
Gma17g02032 616 SMART WD40_4 512 552 IPR001680 GO:0005515
Gma17g02032 616 SMART WD40_4 423 462 IPR001680 GO:0005515
Gma17g02032 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 471 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02032 Gma-Chr17 36553081 36558267 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02032 - - cam:101499588 579.326