Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01966 atggaagggtgcaaaccagctgcaactcccatgaatcaaaaggagaagttttgcaaagaagatggagctgaaaaagtggatgaaaagctgtataggagtcttataggttgcctaatgtatttaagtgcatcaaggcctgacatcttgcatgcaTTGAAGCCTAAGGGATACAACGGCATCTGGAAGATGCGTTCAGGTAATCCAGTTGATGGCTGTGCAATCTTTTGGCATAAATCCAGGTTCAAACTGTTAAATGAAAAATGCATTGAGTTTAATAAGCTGGGACTCAGGGATAATGTTGTTCAACTATGCGTACTAGAAGTACGTAATACTCTCATACTATCCTCTGCTCTCTTGACGGGCTCTAGTAAAGTTGTGGTTTGTAACATTCATGTTCTTTACAATCCTAACAGGGGAGAAATTAAACTTGGTCAGCAGGTTCGAGTGCTGCTTGATAAGGCTAAAGCTGTTTATAAACTCTGGAATGACACCCCTGTAGTTATCTGTGGGGATTTTAATTGTACTCCCAAGAGTCCATTATATAACTTTATATCAGAACAGAAGGTATATGAAATATCTGCTAATGGTTCAGTTCAGGCAACATCCACAGAAGGCGATATAGAAGTTATTGAACAAAATAATTCTCGGTTGGACACGAGGGACCTGGACACTAAATGTCACAGCTTGGCTAATCAACTTGGTAGCATAAAAGAACCTAATCCTTCTTATAGTGAAGGTAGGCTCCATATTGATCATGTAAATGGTGAGATTCATGACATTACTCCTGTGACCTCCTCAGCTCCTGAAGAAGTTCACAATGATGCAACTTGGATTGGCAGCAATGAACATATACCAGATGCTGTCTCAACTTCAAATAAAGAATCCAACTTGCATGTCCCTGAAGGGAATAAACATGTGGAGTTTGACTGTGCCGCAACCTCTCTCCAGGAAGATGATCAATCTTCCAAGGTGAGGATTGATCTTGAGTCGATAGATCTAGACAATGTAGAAATTTCTTCAATGGAACCGTCCAGCCAGAGCTCAGTTTCCTGTGTATTTGAAGATGGAGATAGTCCATCTCATGAGGAAATTGCTAATGACCAAAATAACTGCTCATCAACATCATATCTAGTTGACAAATCGCATCACTTGTCCAACATTGATTTTCCACCAGATGTGAAAGAGAAAGCATTCTTTGATGAGACAGATAAAACCGTTATAGGCGTTGAAAGTGAAGATGACATTCGTTTAATATCTTCCTTACATAATGCTGAAGAAGTGGCTCTTGATCTTGGCCCATCAATGAAATCATATCTTGAAAAGCCATATCAATCTGAGGAATTAGATTCTGCTTCCAACGACTTGTTGCTGCCCGTAGAAAGCAATGAAATGGAGCATGACTTATCTCCAAGGCAGATTTCTAAATCTATTAATTCAGAGCAAGCTACTTATAATCCAGCATTGTGGACCCCTATGGAAATAAATAGAAACTGCAACAGGAAATGCAGAATGCACCTTCTTGGAGCACCCTTTACTGCTTAG 1542 0.358 MEGCKPAATPMNQKEKFCKEDGAEKVDEKLYRSLIGCLMYLSASRPDILHALKPKGYNGIWKMRSGNPVDGCAIFWHKSRFKLLNEKCIEFNKLGLRDNVVQLCVLEVRNTLILSSALLTGSSKVVVCNIHVLYNPNRGEIKLGQQVRVLLDKAKAVYKLWNDTPVVICGDFNCTPKSPLYNFISEQKVYEISANGSVQATSTEGDIEVIEQNNSRLDTRDLDTKCHSLANQLGSIKEPNPSYSEGRLHIDHVNGEIHDITPVTSSAPEEVHNDATWIGSNEHIPDAVSTSNKESNLHVPEGNKHVEFDCAATSLQEDDQSSKVRIDLESIDLDNVEISSMEPSSQSSVSCVFEDGDSPSHEEIANDQNNCSSTSYLVDKSHHLSNIDFPPDVKEKAFFDETDKTVIGVESEDDIRLISSLHNAEEVALDLGPSMKSYLEKPYQSEELDSASNDLLLPVESNEMEHDLSPRQISKSINSEQATYNPALWTPMEINRNCNRKCRMHLLGAPFTA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01966 513 Pfam Endonuclease/Exonuclease/phosphatase family 68 185 IPR005135 GO:0003824
Gma17g01966 513 Gene3D Endonuclease/exonuclease/phosphatase 42 253 IPR036691 -
Gma17g01966 513 SUPERFAMILY DNase I-like 46 190 IPR036691 -
Gma17g01966 513 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 47 209 - -
Gma17g01966 513 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 47 209 - -
Gma17g01966 513 MobiDBLite consensus disorder prediction 344 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01966 Gma-Chr17 35100703 35106528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01966 50 187 EF-hand Containing Proteins AT1G02270 28.767 1.81e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01966 - - gmx:100810446 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01966 17 35100703 35106528 Gma14g01121 14 16549900 16557717 GST