Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01944 ATGCTCTCTCGCTCTCTCAGACCTCGTCACATACTCTCCTCCCTCCGTTCATTACCCTTTaccctaaacccaaacccaaaccctaaccctaaccctaaccGAACCCCTCCAATCCGAGCCTCCACACACCGTCCCTTCTCTTCTTCATGGCTGTCCGAACCTGGAAACCCAATCATCCAATGGCCCTCACTACCCCCACCAAAACCCACTCCGAACCCAAACCCAAACCCAAACCTAAACCCCACACCCGACCCTCCCTCTCCCAACCCAAACGCTCTCTCCGTCATCTCCAACCTCTTCGCCGACCCTTCCCTCTCGCCCGGCCCGGCCCTCCACGCCGAGCTCGACCGGGCTGGGATCGAGCCGGACCCGGCCCTTCTGCTCGCCGTGTTCGATCGCTTCGGCTCGTCGCCCAAGCTGCTGCACTCGCTCTTCCTCTGGGCCCAGACGCGGCCCGCCTTCAGGCCCGGCCCCAAGCTCTTTGACGCCGTAGTCAACGCGCTCGCGAAGGCGAGGGAGTTTGACGCCGCGTGGAAACTTGTTCTCCATCACGCCGAGAAAGACGGGGAAGAAGAAGGAGAAAAAGAAAGGTTGGTTTCCGTTGGAACCTTCGCTATCATGATTCGGCGCTACGCTCGTGCAGGTATGTCCAAACTTGCAATTAGAACATATGAGTTTGCCACAAATAACAAGTCAATTGTGGATTCTGGCTCAGAAATGAGTTTATTGGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCTGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGATTGCGGAAACTCAAGCAGGGAGAGAGACTTTGGGCAGAGATGAAGGAGAATATGAGACCCACTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGAATGCGCCGTGTCGAAAAGGCACTTGAAATGGTTGGTGATATGACCAAAGAAGGAATTGCACCAAATGCAATTGTGTATAATCCAATAATCGATGCACTGGCCGAAGCTGGAAGATTCAAAGAGGCATTGGGTATGTTGGAACGTTTTCATGTTTTGGAAATAGGCCCTACTGATTCAACATACAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCCTCCCAAGTGCTACCACTTATAACTACTTTTTTAGGTACTTTTCAAGATGTAGAAAAATCGAGGAGGGGATGAACCTGTATACAAAGTTGATTCAATCTGGTTATACCCCAGATCGGTTAACTTACCATCTTCTGGTGAAGATGTTATGTGAAGAGGAGAAGTTGGACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGACATGGACTTGGCTACGAGTACCATGTTAGTTCACTTGCTTTGCAAAGTGCGTAGGTTGGAAGAGGCTTTTGTGGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTGACTTTCCAGAGAATGAAAGCTGATTTAAAGAAACAAGGTATGACTGAAATGGCTCAAAAACTTTGCAAGTTGATGTCTTCTGTTCCTTATTCTCCGAATTTGCCAAATACTTATGGTGAAGTCAGAGAAGATGCATATGCACGAAGAAAATCTATAATTCGGAAAGCCAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGACCCTAGTGAACTTCGTAAGCATAGAAGTTCATCAGAAAATACTGTCTCAAGCACAAACAGTTTGATAGAGGATATTGAGAGAAAAAGAAATACAGGATGA 1869 0.4564 MLSRSLRPRHILSSLRSLPFTLNPNPNPNPNPNRTPPIRASTHRPFSSSWLSEPGNPIIQWPSLPPPKPTPNPNPNPNLNPTPDPPSPNPNALSVISNLFADPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLFDAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMKENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLCKLMSSVPYSPNLPNTYGEVREDAYARRKSIIRKAKAFSDMLKDCKDPSELRKHRSSSENTVSSTNSLIEDIERKRNTG 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01944 622 MobiDBLite consensus disorder prediction 17 95 - -
Gma17g01944 622 TIGRFAM PPR: pentatricopeptide repeat domain 383 415 IPR002885 -
Gma17g01944 622 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Gma17g01944 622 TIGRFAM PPR: pentatricopeptide repeat domain 312 346 IPR002885 -
Gma17g01944 622 TIGRFAM PPR: pentatricopeptide repeat domain 279 306 IPR002885 -
Gma17g01944 622 TIGRFAM PPR: pentatricopeptide repeat domain 490 519 IPR002885 -
Gma17g01944 622 Gene3D Tetratricopeptide repeat domain 389 613 IPR011990 GO:0005515
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Gma17g01944 622 MobiDBLite consensus disorder prediction 59 90 - -
Gma17g01944 622 MobiDBLite consensus disorder prediction 590 622 - -
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma17g01944 622 Pfam PPR repeat 489 517 IPR002885 -
Gma17g01944 622 Pfam PPR repeat 279 306 IPR002885 -
Gma17g01944 622 Pfam PPR repeat 245 263 IPR002885 -
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Gma17g01944 622 PANTHER LEAF PROTEIN-LIKE 106 619 - -
Gma17g01944 622 Pfam PPR repeat family 309 357 IPR002885 -
Gma17g01944 622 Pfam PPR repeat family 382 425 IPR002885 -
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Gma17g01944 622 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 106 619 - -
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Gma17g01944 622 MobiDBLite consensus disorder prediction 36 56 - -
Gma17g01944 622 Gene3D Tetratricopeptide repeat domain 305 377 IPR011990 GO:0005515
Gma17g01944 622 Gene3D Tetratricopeptide repeat domain 120 238 IPR011990 GO:0005515
Gma17g01944 622 Gene3D Tetratricopeptide repeat domain 239 304 IPR011990 GO:0005515
Gma17g01944 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 306 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01944 Gma-Chr17 34525151 34529077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01944 92 584 Glycosyltransferase AT1G05670 22.873 2.55e-37 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01944 - - gmx:100793484 1149.42