Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01861 ATGTATGAACCAAAAAATATCCTCATTACTGGAGCAGCTGGGTTTATAGCCTCCCATGTCACTACCAGGCTAATTGATAGGTACCCTAGCTACAAGATTGTAGCTCTTGATAAATTAGACTATTGCTCCACTTTCAAGAATTTGTTGTCATGTTCTTCATCATCAAAATTCAAATTCATCAAAGGTGATATAGCCACTGCTGATATTGTGAATCACATTTTGATAGAAGAGGAAATAGACACCATTATGCATTTTGCTGCTCAAACACATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTACAACAATATCTATGGCACTCATGTGCTTCTTGAAGCCTGCAGGGTCACCAATTGTGTCAAAAGGTTCATTCATGTTAGCACAGATGAAGTCTATGGTGAAACCGACTTGGATGCTGATATTGGAAATCATGAGGCATCTCAGCTTCTGCCAACCAATCCTTATTCTGCAACAAAAGCAGGTGCAGAAATGTTGGTCATGGCTTATCACAGGTCTTATGATCTTCCAATTATAACTTCTAGAGGCAATAATGTTTATGGTCCCAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTGCTTGCCATGAAGGGTGAGAAATTGCCAATCCATGGAGATGGATCCAATGTGAGGAGCTACCTCCACTGTGGGGATGTGGCAGAAGCCTTTGAGGTCATACTTCACAAAGGAGAGATTGGACAAGTTTACAACATCGGCACTAAGAAAGAAAGGAGTGTGTTAGATGTGGCAGAGGAAATATGCAAGCTCTTTAAATTGAATCCTAAAGATGTCATTGAGTTTGTTCAAGATAGGCCATTCAATGATAAGAGATATTTCCTAGATGATCAAAAGCTCAAAAAACTTGGTTGGCAGGAGAGAACTCCATGGGAGGAAGGACTTAAGATGACAATTGAATGGTACAAAAAGAATCCTGATTGGTGGGGTGATGTATCCACTGCTTTAAATCCACATCCACGTTTTTCGGCTATCAATCTCTCCGATGAAGCTCAATGGTCCTTTCAATATGGATACTCAAGGCTTGCAAGGTCATATACTGAAGTTGGTAGAAAAAAATCAAGATTGAAGTTTTTGATATATGGGAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGCTTTGTGATGAAGAGAGAATTGATTGGGAATATGGGAGAGGAAGATTGGAAGATAGGAAATCACTTATGGAGGATATAAGGAGGGTAATGCCAACCCATGTGTTGAGTGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGCTGAAACTATAAGGACTAATGTAGTGGGGATTTTAACACTGGCTGATGTGTGCAGGGAATATAGCTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAGCATCCTCTAGGATCAGGCATTGGGTTCAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCAAAGACCAAGGCTATGGTGGAGGATCTTCTAAAAAATTATGACAATGTCTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAACAAGGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAACTCTTACCCATATCCATTGAAATGGCTAAGAGGAACTTGAAAGGGATATGGAACTTCACCAACCCAGGAGTCATTAGCCACAATCAGATATTAGAATTGTATAGGGATAACATAGACCCACAATTTAAATGGGAAAATTTTGATTTGAAAGAACAAGCAAAGGTAATAGTTGCTCCCAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAATGAGTTTCCAAATTTATTGTCCATCAAAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1968 0.3933 MYEPKNILITGAAGFIASHVTTRLIDRYPSYKIVALDKLDYCSTFKNLLSCSSSSKFKFIKGDIATADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGETDLDADIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYDLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFEVILHKGEIGQVYNIGTKKERSVLDVAEEICKLFKLNPKDVIEFVQDRPFNDKRYFLDDQKLKKLGWQERTPWEEGLKMTIEWYKKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLARSYTEVGRKKSRLKFLIYGRTGWIGGLLGKLCDEERIDWEYGRGRLEDRKSLMEDIRRVMPTHVLSAAGVTGRPNVDWCESHKAETIRTNVVGILTLADVCREYSLYMMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNQILELYRDNIDPQFKWENFDLKEQAKVIVAPRSNNEMDASKLKNEFPNLLSIKDSIIKFVFEPNKKT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01861 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Gma17g01861 655 Gene3D - 7 311 - -
Gma17g01861 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Gma17g01861 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 653 - -
Gma17g01861 655 Gene3D - 198 320 - -
Gma17g01861 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Gma17g01861 655 Gene3D - 362 655 - -
Gma17g01861 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 367 644 IPR036291 -
Gma17g01861 655 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 2 653 - -
Gma17g01861 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 328 IPR036291 -
Gma17g01861 655 Pfam RmlD substrate binding domain 372 542 IPR029903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01861 Gma-Chr17 32028351 32030846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01861 6 317 Miscellaneous Gene Families AT1G02000 24.776 1.29e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01861 K12450 - gmx:100789644 1330.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01861 17 32028351 32030846 Gma17g01861 17 32028351 32030846 ECH
Gma17g01861 17 32028351 32030846 Gma14g01242 14 20392373 20394821 GST