Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01860 ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTgatttgaaatgttacgagtgtggtgaacctggtcattttgctcgtgaatgtCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGTAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCTCCTTATCGTGGGCGTGAGGAGGTCCCATATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGA 537 0.4804 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01860 178 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Gma17g01860 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Gma17g01860 178 Gene3D - 1 73 IPR012677 -
Gma17g01860 178 SMART rrm1_1 3 69 IPR000504 GO:0003723
Gma17g01860 178 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Gma17g01860 178 MobiDBLite consensus disorder prediction 66 88 - -
Gma17g01860 178 Gene3D - 84 142 - -
Gma17g01860 178 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Gma17g01860 178 MobiDBLite consensus disorder prediction 100 178 - -
Gma17g01860 178 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 170 - -
Gma17g01860 178 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 170 - -
Gma17g01860 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gma17g01860 178 CDD RRM_SRSF3_like 3 71 - -
Gma17g01860 178 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Gma17g01860 178 SUPERFAMILY Retrovirus zinc finger-like domains 82 106 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01860 Gma-Chr17 31913318 31916939 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01860 K12896 - gmx:100796961 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01860 17 31913318 31916939 Gma17g01860 17 31913318 31916939 ECH
Gma17g01860 17 31913318 31916939 Gma14g01245 14 20484607 20488283 GST