Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01856 ATGATTCTTCAACTTCACCGAACCTTCTTCTCCACCACCACCACCTCCTCCTCCTCCGTACCTTCCTCACACCCCCTCTCTTTCTGCCACTTCATGTTGCAGTTCAGGGCGATCCAGACTCCACCAATCGCTCTCGCGCCGCACGCCACGTCATCTCTCACCGGCGCCACCGTCCAATTTCGAACTCGTCTTCTCTTCCCTCCAAGAGTTACCGCGAAGTGCCACGCGACGTCGTTTGGTAATTTCCGTTTGCAGTTTGCTTTGAACTCCACGACGCCGTTTGGCGGCGGCGTTTTCTCGAGGAGGTTCGCCACGCGCCCCGCGACTGATGGTGGCAAGCAGAAGAAGCGGCAAGTAAGGGCTGCCGTCGTTCGCGGAAAGGAGAAGGACGGAGGTGCGGTAAACGACGCCGCGTCGAAAGAGGTTGACAATGCGGCTGCTTCTGAGGGAAGTTTGGGCGAGAAGAAGAAGAAGGGATCGTCACGCGCCGCTGCGAGTGGCGAAGAGGACGAGAAGAGTGTGAAGAAGAAAACGGCGAAGCAGAAGAAGACGACGTCGACGCAAGAGGATGGTGCTGTTGAAGCTTCTAAAAAATCTTCCAAAGGGAACAAGAAGAAGGATTCGAAGAAGAGTTTGACTGAGAGTGCTATTGAAGAAATAACAGAGAATTCTGCTTCTGCGAAGGACAAAGTGAAGAAGAAAAATGGGAATTCTAGTCTAATTGAAGAGGCAAAACCCCTATGGAATTTTACGTACAAGCCATTGTATCCTCCCACTGGAAAGTCTGTGGTGGTTGTGGAGTCTGTTACAAAGGCGAAGGTTATTAAGAGATACCTTGGTGATATGTATGAAGTCTTGCCAAGCTATGGTCATGTAAGAGACTTGGCTGCAAGGTCTGGATCAGTGCGACCTGATGATGATTTTAGTATGGTGTGGGAGGTTCCATCGCCTGCTTGGACTCATCTGAAGAGCATCAAGGTTGCACTGAGCGGAGCAGAAAACCTTATTCTTGCATCAGATCCTGATCGTGAGGGGGAGGCTATTGCTTGGCACATCATTGAGATGTTACAACAACAGGGTGCTCTACATGATAATATTTCTTTAGCAAGAGTAGTCTTTCACGAAATAACTGAAAAATCTATAAAAGGTTCCCTACAAACACCGCGAGAGATTGACATAAATTTGGTTCAAGCTTACCTTGCACGGCGGGCTCTTGATTACTTGATTGGGTTTAGCATTTCACCATTACTATGGAGGAAGTTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCTGCTGCACTTTCTCTTATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCAAAGGAGTATTGGATTGTAGAGGTTCAATTGAAAAAGAAAGAGCTGAGATCAAACAAGAACCTTACTTTTCCTGCTCACTTGACCCATTTTGATTCAAAAAAGTTGAATCAGTTTTCGATTACTTCTGATACTGAGGCTAGAGATATTCAAAGCACTATAAACTCAGCTGATTTTCATGTTGTTAGCTTGAAAAAAAGCAAAAGTAGAAGAAATCCTCCTACACCTTATATAACATCGACACTTCAGCAAGATGCTGCAAACAAGTTGCATTTCACGGCAAGTCACACAATGAAGCTTGCACAGAAGCTCTACGAGGGAGTTGAACTGTCTGATGGTATAGCAGTGGGTCTGATAACATATATCAGAACTGATGGACTCCATATTTCTGATGAAGTTGTTGCTAGTATACGCTCGTTGATCATTGAAAGGTATGGACAAGATTTTGTCTCGCAAAGTGCACCAAAGTATTATAAAAAGGTGAAAAATGCACAAGAAGCCCATGAAGCCATTAGACCAACTGACATATGCAAGTTGCCATCAATGCTTTCTGGGATACTTGATGGAGAATCCTTGAAGCTCTACACACTTATTTGGTCACGAACAGTTTCATGTCAAATGGGACCTGCTGTCTTTGAGCAGATACAACTTAATATTGGAAATCCTGATAAGTCTATTATATTACGGTCTTCCAGCTCAAGGGTTGAGTTTCCTGGATATCGGGCAGTTTTTACGGACATTGTTACTGAAGCTGTTCAAGATAAAGACAGTGATGAATTCAGCCGTGATCAAACATTTGGAGTACTAAATTCCTTGAAGACAGGGGATCCATTACATGTGGTTCAGACTGAACCTAATCAGCACCATACACAACCACCACCACGGTACTCTGAAGCATCATTGGTTAAGAAACTTGAGGAGCTTGGGATTGGAAGGCCATCAACATATGCATCCACAATAAAAGTTTTACAGGATAGAAACTATGTGACAGTAAAAAGTCGAGTTCTGTCTCCAGAGTTTCGTGGTTGCATGGTTTCAGCTTTTCTGTCGCATCATTTTTCAGAGGTCATGGACTACGGTTTTACTGCCGATATGGAAACCGAGCTGGATAATGTTTCTGGTGGATTAACTGAATGGAAAGGCCTCCTTAGAGACTATTGGACACGATTTAAATCATATTGTGAGCGTACATCTAATGTTCATATTCATCAGGTTGAGAAGATGTTGGAAAAAAAATTTGGCGATTATTTATTTGCTTCTCTCCCAGATCAGAGCCGGGTGTGTCCAAGTTGTATGGAAGGCACACTTATTTTTAAAGTAAGTAGATTTGGTGCTGGCTACTTTATAGGCTGTGATCAACATCCTAGGTGCAAGTACATTGCTAAAACATTATACGGTACAGAGGAGGAAGAGGATGCATCTCAGCCAAACAGTAGAGTAGAGGAACCAAAACTCCTAGGTGTTACTAGTGGTTCATATGAAAAGGTTCTTTTGAAAAGTGGGCCTTATGGAGTTTATGTTCAGCTCGGAGAAGACAGGAAGGGATATATACCTAAAAGAGCTTCTGTCTCTCATATCAAGGATGTGGATTCTATCACCCTGAAAGATGCACTTGAGGTGCTACAATACCCATTGACATTGGGTAATCATCCTAAGGATGGGCAGCCTGTCATATTAAAGCTTGCAAGAGCTGGGCTTTGTGTTAGACATCGGCGCACGGTTGCTTCTGTTCCTAAGAATGTGAAGCCAAGTGATGTTACCCTGGAAAAAGCACTTGAATATTTATCTGGTGATGATGTTAGACGATCTGGTCGTCCAAAAGGCAAATCTAAAGTTCAAGAAGTTGAAGTTATTGAAGCGTTTTAA 3213 0.436 MILQLHRTFFSTTTTSSSSVPSSHPLSFCHFMLQFRAIQTPPIALAPHATSSLTGATVQFRTRLLFPPRVTAKCHATSFGNFRLQFALNSTTPFGGGVFSRRFATRPATDGGKQKKRQVRAAVVRGKEKDGGAVNDAASKEVDNAAASEGSLGEKKKKGSSRAAASGEEDEKSVKKKTAKQKKTTSTQEDGAVEASKKSSKGNKKKDSKKSLTESAIEEITENSASAKDKVKKKNGNSSLIEEAKPLWNFTYKPLYPPTGKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVFHEITEKSIKGSLQTPREIDINLVQAYLARRALDYLIGFSISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWIVEVQLKKKELRSNKNLTFPAHLTHFDSKKLNQFSITSDTEARDIQSTINSADFHVVSLKKSKSRRNPPTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELSDGIAVGLITYIRTDGLHISDEVVASIRSLIIERYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDICKLPSMLSGILDGESLKLYTLIWSRTVSCQMGPAVFEQIQLNIGNPDKSIILRSSSSRVEFPGYRAVFTDIVTEAVQDKDSDEFSRDQTFGVLNSLKTGDPLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKSRVLSPEFRGCMVSAFLSHHFSEVMDYGFTADMETELDNVSGGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNSRVEEPKLLGVTSGSYEKVLLKSGPYGVYVQLGEDRKGYIPKRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILKLARAGLCVRHRRTVASVPKNVKPSDVTLEKALEYLSGDDVRRSGRPKGKSKVQEVEVIEAF 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01856 1070 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 551 574 IPR023406 GO:0003917
Gma17g01856 1070 MobiDBLite consensus disorder prediction 150 177 - -
Gma17g01856 1070 Pfam Toprim domain 263 376 IPR006171 -
Gma17g01856 1070 SMART toprim5 261 361 IPR006171 -
Gma17g01856 1070 Gene3D - 258 397 - -
Gma17g01856 1070 SMART topIban2 367 455 IPR003601 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 ProSiteProfiles Toprim domain profile. 261 376 IPR006171 -
Gma17g01856 1070 SMART topIaneu2 514 795 IPR003602 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 Pfam Topoisomerase C-terminal repeat 999 1045 IPR025589 -
Gma17g01856 1070 Pfam Topoisomerase C-terminal repeat 943 995 IPR025589 -
Gma17g01856 1070 PANTHER BNAA01G05990D PROTEIN 137 1057 - -
Gma17g01856 1070 TIGRFAM topA_bact: DNA topoisomerase I 264 910 IPR005733 GO:0003677|GO:0003917|GO:0006265
Gma17g01856 1070 MobiDBLite consensus disorder prediction 105 214 - -
Gma17g01856 1070 MobiDBLite consensus disorder prediction 194 214 - -
Gma17g01856 1070 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 137 1057 IPR000380 GO:0003677|GO:0003917|GO:0006265
Gma17g01856 1070 Coils Coil 217 237 - -
Gma17g01856 1070 Gene3D Bacterial Topoisomerase I, domain 1 868 919 - -
Gma17g01856 1070 Pfam DNA topoisomerase 390 831 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 Pfam Topoisomerase DNA binding C4 zinc finger 875 911 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Gma17g01856 1070 Gene3D Topoisomerase I, domain 4 522 658 IPR013826 -
Gma17g01856 1070 MobiDBLite consensus disorder prediction 108 136 - -
Gma17g01856 1070 Hamap DNA topoisomerase 1 [topA]. 261 1020 IPR028612 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 CDD TOPRIM_TopoIA_TopoI 261 388 IPR034149 -
Gma17g01856 1070 Gene3D Topoisomerase I, domain 2 401 836 IPR013824 -
Gma17g01856 1070 SUPERFAMILY Prokaryotic type I DNA topoisomerase 261 884 IPR023405 -
Gma17g01856 1070 PRINTS Prokaryotic DNA topoisomerase I signature 335 348 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 PRINTS Prokaryotic DNA topoisomerase I signature 425 443 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 PRINTS Prokaryotic DNA topoisomerase I signature 565 574 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 PRINTS Prokaryotic DNA topoisomerase I signature 643 659 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 PRINTS Prokaryotic DNA topoisomerase I signature 758 772 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 CDD TOP1Ac 393 842 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma17g01856 1070 Gene3D Topoisomerase I, domain 3 447 742 IPR013825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01856 Gma-Chr17 31788785 31851585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01856 - - gmx:100788049 2053.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01856 17 31788785 31851585 Gma17g01856 17 31788785 31851585 ECH