Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01805 ATGTCGACCGCGTCACTGGACGAGGAAACCGCAAAGAAAGTCGTACGACAGGTGGAGTTCTATTTCAGTGATAGCAACCTTCCCAGAGACAATTTTCTCAGGAAAACCGTCACCGAAAGCGAAGATGGCATGGTTAGTTTGGCTTTGATTTGCTCTTTTAATCGGATGCGAACCAATCTTAATCTGGGGGATGTTAAGCTGGACGGGGTGACCAAAGATACTGTTAAAGCTGTTGCTCAAGCTTTGAAAAATTCGGCTTTGGTCAGAGTCTCTGAAGATGGGACCAAAGTTGGCAGGGCAACTGAACTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATTGCCATTTGAATATGATGTGAAGCTTGAAGATGTGGAGACATTCTTTGCTCAATATGCCAAGGTTAATAGTGTTCGGTTGCCTCGCCATGTTGGAGACAAAAAGTTCTTTTGTGGCACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAACGGAAAAAGTTTTGAAGCAAAGTCTGGTCTATGCAGGGGCTGAGCTACAATTAAAGCTAAAGAAGGACTTTGATGCACAAAGAGAAAAGGAATTAGAAGAGCAAGAAAAATTCCGGCCACCTTTGGGTTCAGGTCACCAGAATAACACAAATACAGAAGCAAACTACCCTAAAGGCTTACTTATAGCCTTCAAACTAAAGAGCATTTCTGATCAAGTTCCTTTGGATCAAAATAACATTGATCAGCAAGCCAATGACAGTAATGTTGTGAAGGATAATGCTGACAATGATAAAGAAAACAATGGAGTGAgtgaaggaaaagacacagaaggtgaagaaaagagcaaagaaACTGATGGAAAAAATTATGCTGCTGCTTACAAGGACAACAATGATGTTGTCTCACGTGAGGATTTAAAGGGTGTCTTTGAGAAGTTTGGTACTGTGAAGTACATTGATTTCAAGATTGGAGAAGAGTCAGGATACATTCAATTTGAAGAACCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTTCTGAAAAGGAGGGCTTAGTTGTGAAAAATTATATTGCTACTCTAGATCCAGTAACTGGTGAGGCTGAGAGAGAATACTGGACCCTGCTTCGTGGTAATCAGGGAAAGATCCGAGGATGCACAAATAACCGAGGAAGGGGTGGAAAACATGGTAGAGGGGGCAAATACTCCAGGTCCAGAGAGAATGAATCTGCAGTAGATCGCCCAAACAAAGTTAGAAAGTCATAG 1278 0.41 MSTASLDEETAKKVVRQVEFYFSDSNLPRDNFLRKTVTESEDGMVSLALICSFNRMRTNLNLGDVKLDGVTKDTVKAVAQALKNSALVRVSEDGTKVGRATELLKPEEVIEQVEIRTIAALPFEYDVKLEDVETFFAQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEETEKVLKQSLVYAGAELQLKLKKDFDAQREKELEEQEKFRPPLGSGHQNNTNTEANYPKGLLIAFKLKSISDQVPLDQNNIDQQANDSNVVKDNADNDKENNGVSEGKDTEGEEKSKETDGKNYAAAYKDNNDVVSREDLKGVFEKFGTVKYIDFKIGEESGYIQFEEPEAAQKARAAAVLSEKEGLVVKNYIATLDPVTGEAEREYWTLLRGNQGKIRGCTNNRGRGGKHGRGGKYSRSRENESAVDRPNKVRKS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01805 425 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma17g01805 425 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma17g01805 425 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Gma17g01805 425 SMART la 8 100 IPR006630 -
Gma17g01805 425 SMART rrm1_1 117 189 IPR000504 GO:0003723
Gma17g01805 425 SMART rrm1_1 295 359 IPR000504 GO:0003723
Gma17g01805 425 Gene3D - 277 396 IPR012677 -
Gma17g01805 425 PANTHER LUPUS LA PROTEIN-RELATED 4 249 IPR045180 -
Gma17g01805 425 PANTHER LUPUS LA PROTEIN-RELATED 286 424 IPR045180 -
Gma17g01805 425 CDD LA_like_plant 10 99 - -
Gma17g01805 425 Gene3D - 2 104 IPR036388 -
Gma17g01805 425 PANTHER OS02G0610400 PROTEIN 286 424 - -
Gma17g01805 425 PANTHER OS02G0610400 PROTEIN 4 249 - -
Gma17g01805 425 ProSiteProfiles xRRM domain profile. 286 413 IPR014886 GO:0003723
Gma17g01805 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Gma17g01805 425 MobiDBLite consensus disorder prediction 261 293 - -
Gma17g01805 425 MobiDBLite consensus disorder prediction 200 224 - -
Gma17g01805 425 MobiDBLite consensus disorder prediction 404 425 - -
Gma17g01805 425 MobiDBLite consensus disorder prediction 249 293 - -
Gma17g01805 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Gma17g01805 425 Pfam RNA binding motif 301 396 IPR014886 GO:0003723
Gma17g01805 425 Gene3D - 109 207 IPR012677 -
Gma17g01805 425 SUPERFAMILY RNA-binding domain, RBD 108 194 IPR035979 GO:0003676
Gma17g01805 425 SUPERFAMILY "Winged helix" DNA-binding domain 7 102 IPR036390 -
Gma17g01805 425 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Gma17g01805 425 MobiDBLite consensus disorder prediction 387 425 - -
Gma17g01805 425 Pfam La domain 14 84 IPR006630 -
Gma17g01805 425 SUPERFAMILY RNA-binding domain, RBD 302 394 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01805 Gma-Chr17 27690875 27699666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01805 K11090 - gmx:100792984 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01805 17 27690875 27699666 Gma17g01805 17 27690875 27699666 ECH