Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01803 ATGAATGCATGGAGCCAAGCTGGATTCTTGGAAAAATGCAAGGAAATCTACAATAACATGTTAAAATCTGGTGTGAAGCCGGATGGACATGCTTATAGTATTCTTGCTAAAGGTTATGTGCGAGCACAAGAAATGGAAAAGGCTGAAGAACTGCTTACTGTCATGACTAAATCAGGTGTCCAACCAAATGTTGTTATATTTACAACTGTGATGAGTGGATGGTGCAGTGTTGGCAGAATGGACAATGCCATGAGGGTTTTTGACAAGATGGGTGAATTTGGGGTTTCTCCAAATTTGAAGACTTTTGAGACACTAATCTGGGGATATGCAGAAGCAAAACAACCCTGGAAAGCAGAAGGAATGTTGCAAATAATGGAAGAGTTTCATGTTCAACCCAAGAAATCGACCATTTTGCTTGTTGCAGAAGCTTGGTGTTTTGCTGGATTGAAAGAAGGGGCAAAGACACTACTGATTACTGTAAAAACTGAGAAGATGATCAATTCAATAGATGGAGACAACAATATAACTGCTAAAATGTCAGAGAAAATTTGCCAAAAGCCACATACTAATGCTCCTTTTTGTAGTCTCTTAAAAGACTTCATCTATATCTTCCACTGA 618 0.3867 MNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWCFAGLKEGAKTLLITVKTEKMINSIDGDNNITAKMSEKICQKPHTNAPFCSLLKDFIYIFH 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01803 205 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Gma17g01803 205 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 197 - -
Gma17g01803 205 Pfam PPR repeat 1 25 IPR002885 -
Gma17g01803 205 Pfam PPR repeat 31 60 IPR002885 -
Gma17g01803 205 TIGRFAM PPR: pentatricopeptide repeat domain 65 98 IPR002885 -
Gma17g01803 205 TIGRFAM PPR: pentatricopeptide repeat domain 1 28 IPR002885 -
Gma17g01803 205 TIGRFAM PPR: pentatricopeptide repeat domain 31 64 IPR002885 -
Gma17g01803 205 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Gma17g01803 205 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 27 IPR002885 -
Gma17g01803 205 PANTHER OS01G0228400 PROTEIN 1 197 - -
Gma17g01803 205 Pfam PPR repeat family 62 110 IPR002885 -
Gma17g01803 205 Gene3D Tetratricopeptide repeat domain 1 192 IPR011990 GO:0005515
Gma17g01803 205 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01803 Gma-Chr17 27548219 27548836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01803 20 181 Miscellaneous Gene Families AT4G11690 31.288 2.67e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01803 K17710 - gmx:100779093 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01803 17 27548219 27548836 Gma17g01803 17 27548219 27548836 ECH