Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01419 ATGCCGGTTGCCGCTTCCGCCATTTACTTTCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGGGGAAATATGGTGGATGCTTTTAGGACGCATGTTATGCAAACGAAGGAGCTTGGTACTTGCCCTGTGAGGCAGATTGGTGGATGCTCTTTCTTTTACATGAGGATCAGCAATGTCTACATTGTCATTGTTGTTAGCAACAATGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGGCTGTTGCATTGTTCCGATCATACTTTGGTGGAGTTTTTGACGAGGATGCAATTCGCAATAATTTTGTACTCATTTATGAGCTCCTAGATGAAATTATGGACTTTGGTTACCCACAAAATCTTTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGCCCACAGATAGACCTGTTCCAAATGCAACTTTACAAGTTACTGGTGCTGTTGGTTGGCGGAGAGAAGGGCTTGTGTACAAAAAGAATGAGGTAGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAGGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCTTGAGAAAGAAGCACAACTTAAGTCCCGTCCTGCTAAAAGTGGTAAAAGTATCGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACTGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAGTATCGTATAACTGAGGGAGTTAATCTTCCCTTCAAAGTATTGCCAACCATCAAGGAACTTGGTCGATCCCGGATAGAAGTGAACGTTAAGGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGAACTTATTTCCACAACAACAGAAAAGAAATCTTGGACTAGACCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGTGTCCGTTTCCTCAAGGTGTGGGAGAAGAGTGGGTACAATACCGTTGAGTGGGTTCGTTACATTACAAAAGCAGGATCCTACGAGATTAGGTGCTAG 1320 0.4205 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHVMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSNNANVACAFKFVVEAVALFRSYFGGVFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPAKSGKSIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRSRIEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFTVTSGRAKYNASIDCLVWKIRKFPGQTESTLSAEVELISTTTEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01419 439 Gene3D Mu homology domain, subdomain B 175 434 - -
Gma17g01419 439 PIRSF AP_complex_mu 4 439 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 CDD AP-2_Mu2_Cterm 175 438 IPR043512 -
Gma17g01419 439 PANTHER BNAA02G36830D PROTEIN 3 439 - -
Gma17g01419 439 Gene3D - 5 145 - -
Gma17g01419 439 PRINTS Clathrin coat assembly protein signature 318 333 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 PRINTS Clathrin coat assembly protein signature 102 129 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 PRINTS Clathrin coat assembly protein signature 169 197 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 PRINTS Clathrin coat assembly protein signature 249 276 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 PRINTS Clathrin coat assembly protein signature 358 369 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gma17g01419 439 Pfam Adaptor complexes medium subunit family 167 439 IPR028565 -
Gma17g01419 439 SUPERFAMILY SNARE-like 6 142 IPR011012 -
Gma17g01419 439 ProSiteProfiles Mu homology domain (MHD) profile. 178 438 IPR028565 -
Gma17g01419 439 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 166 438 IPR036168 -
Gma17g01419 439 Gene3D Mu homology domain, subdomain B 291 438 - -
Gma17g01419 439 CDD AP2_Mu_N 6 144 IPR043532 -
Gma17g01419 439 PANTHER AP COMPLEX SUBUNIT MU 3 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01419 Gma-Chr17 13323398 13329740 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01419 K11826 - gmx:100800916 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01419 17 13323398 13329740 Gma17g01419 17 13323398 13329740 ECH
Gma17g01419 17 13323398 13329740 Gma05g01129 05 32227359 32233863 GST