Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01413 ATGGCCACGAGACCCGAGAGTGAAAAAGACCCTCCACAACCACCTTCACGTGGCTTTCTGGCCACAGTACAAGAAATCACAAGAATCTATAGTTCACTGCCACCTAGACCTTCTATTGAAGAAGTAGAAGCTGCCACGTCCACTGTGGACACCCTCAACAACGAGGAGCAAATCAAACTCAACGAAATCTCAATGCAACAACAACCTCCTCACGATGATGTCCCTCAAGACCTCTTCTCTGTCCTGCAACAACTCAAAAAGACTATGGTTCTGTTCCACACTCATCAACAGAGGAGAGATGCGCTTTATCTTCTTGAGCTTGAAAATATGTTTCAAACCTTCGGTGATCTCATTCAGAGGGCTTCTGAATTAGTTTCTGGAGATACCCAGAAGCAAAAACTTCCCACTATACCCGAGGAACACGCGGTGATCACTGAGGAAAGTGAAACTCTGGTGAAGGAAGAGGAAGGAAGACACAAGAATGTTTTCCATGTGGTAAAGCCTTCCTTGTCTGCAGGGGATGGAAGCACTGAGAAATTAAGTCTAATGAAAGTGGCTACTGTTATAGAAAGTTGTGCTGGTAGTGGAGCTACAATCCTTGAGCTTAGAGGGAAATTGGTGGATCAGATGGAGTGGTTGCCTGTGTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCTGAAAACAGACTCATGGCTCTTCCAACAACCATTGTGGGTCTTAAGGCCTTAACAAAGCTTGATCTTCACTCAAACCAACTTATAAACCTTCCTCACTCATTTGGTGAATTGATAAACCTTGTTGATCTCGACCTCCACGCCAACAAATTGAAATCACTTCCTGCTACTTTTGGAAACTTGACAAACCTCACTGATCTTGATTTGAGCTCAAATGGGTTCACAGATTTACCAGAGACAATTGGGAATTTGAGCAGCTTGAAGCGATTGAATGTTGAAACGAACGAGCTTGAGGAACTGCCTTACACAATTGGCAATTGCTCATCACTATCCGTGCTAAAGTTGGATTTGAATCAGCTCAAGGCCCTTCCTGAGGCAATTGGGAAGCTTGAATGCTTGGAGATTCTCACTTTGCACTATAATAGAGTTAAGAGGTTGCCTTCCACAATGGATAATCTATGCAATTTGAAGGAACTTGATGTTAGCTTTAATGAACTTGAGTTTGTACCGGAGAGCCTGTGTTTTGCAACTAATTTGAAGAAATTGAACTTGGGAAAGAACTTCGCGGACCTAAGAGCCTTGCCAGCATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGACATAAGTGATGATCAAATAAAAGCTCTACCAGAGTCTTTCAGGTTCTTGTCAAAGTTGAGAGTTTTTAGGGCTGATGAGACCCCCCTTGATTTGCCACCAAGAGAATTGGTCAAGTTGGGTTCTCAGGAAGTTGTGCAGTATATGGCTGATTTTGTCACCAAGAGGGATGCAAAACTTGTGCCATCAAAGAAGAAAAAGAAGGGGTTTTGGTTCTGGTTTTGCTCCATATTTTGCCCCCAACTGAAATGA 1557 0.4297 MATRPESEKDPPQPPSRGFLATVQEITRIYSSLPPRPSIEEVEAATSTVDTLNNEEQIKLNEISMQQQPPHDDVPQDLFSVLQQLKKTMVLFHTHQQRRDALYLLELENMFQTFGDLIQRASELVSGDTQKQKLPTIPEEHAVITEESETLVKEEEGRHKNVFHVVKPSLSAGDGSTEKLSLMKVATVIESCAGSGATILELRGKLVDQMEWLPVSIGKLSDVTEMDLSENRLMALPTTIVGLKALTKLDLHSNQLINLPHSFGELINLVDLDLHANKLKSLPATFGNLTNLTDLDLSSNGFTDLPETIGNLSSLKRLNVETNELEELPYTIGNCSSLSVLKLDLNQLKALPEAIGKLECLEILTLHYNRVKRLPSTMDNLCNLKELDVSFNELEFVPESLCFATNLKKLNLGKNFADLRALPASIGNLEMLEELDISDDQIKALPESFRFLSKLRVFRADETPLDLPPRELVKLGSQEVVQYMADFVTKRDAKLVPSKKKKKGFWFWFCSIFCPQLK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01413 518 Gene3D Ribonuclease Inhibitor 178 496 IPR032675 -
Gma17g01413 518 PANTHER LEUCINE-RICH REPEAT-CONTAINING 22 514 - -
Gma17g01413 518 SUPERFAMILY L domain-like 191 464 - -
Gma17g01413 518 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 22 514 - -
Gma17g01413 518 SMART LRR_typ_2 358 380 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 220 242 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 266 288 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 312 335 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 429 451 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 289 311 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 243 265 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 381 404 IPR003591 -
Gma17g01413 518 SMART LRR_typ_2 336 357 IPR003591 -
Gma17g01413 518 Pfam Leucine rich repeat 260 301 IPR001611 GO:0005515
Gma17g01413 518 SMART LRR_bac_2 289 308 - -
Gma17g01413 518 SMART LRR_bac_2 312 331 - -
Gma17g01413 518 SMART LRR_bac_2 335 354 - -
Gma17g01413 518 SMART LRR_bac_2 381 400 - -
Gma17g01413 518 SMART LRR_bac_2 220 239 - -
Gma17g01413 518 SMART LRR_bac_2 429 448 - -
Gma17g01413 518 SMART LRR_bac_2 243 262 - -
Gma17g01413 518 ProSiteProfiles Leucine-rich repeat profile. 291 312 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01413 Gma-Chr17 13274777 13277213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01413 138 444 Receptor kinase-like Gene Family AT3G11080 30.211 1.01e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01413 - - gmx:100798442 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01413 17 13274777 13277213 Gma17g01413 17 13274777 13277213 ECH
Gma17g01413 17 13274777 13277213 Gma05g01136 05 32358896 32361773 GST