Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01366 ATGGTGCTTCCTTTGACCAAATTCATTTTGTTTCGTAACCATTTCTTCAGAAAGTTTTCACCTTTACACAGGATTTTTCAAGGGCATGTCTGCTTTGAGCAGTTTCCTTTTCTGCAAAAATTTTCCACTTCTGGCCACTGTGAAAGACTATCATGGGAACGTTCCACCGAAGAAATTCTATTGGGGAAGCTTAAATTTGCTTTGAGGAATCACCAGGTGCAAGAAGCATGGGAATCATTTCATGATTTTAGAAGCCTTTATGGTTACCCTGAGATTGTTAGAGAGAAATCAGGTTTACTTCATGCTGATACGTTAACCAAACTTGCACTGTCTCTAGCTAGGTTGCAAATGACATGCCCTGCCTCAGTGGTTCTTAGATTGATGCTTGACAAAGGGTGTGTGCCCTCTATGCATTTGTTGTCTTTGGTTGTTTTTCATATTGCGAAGACAGAAATTGGAACATATCTTGCATCTAATTATCTGTTTCAAGTTTGTGATTTTTACAATTGCTTGAATGATAAAAAGGGTAACCATGCGGTCAAGGTCGAGCTGGATACCTTGGTCTTTAACCTTGTTCTTGATGCTTGTGTGAGGTTtaaattgtctttgaaaggcctgagcctaattgaattaatgTCAATGACTGGGACCGTGGCCGATGCACATTCGATTGTGATAATTTCACAGATTCTAGAGATGAATGGTTTGAGAGATGAACTGAAGGAATTGAAAGATCATATTGGCAGAGTTTCGTCTGTTTATGTTTGGCACTATCGTCAGTTTTATGATAGTTTGTTGAGCTTGCACTTTAAATTTAATGACATTGATGCTGCTGCTAAGCTTGTTCTGGATATGACTAGCTCGCATAACTATGATGTTAAAAAAGAATGTGAGAAACATTTGCAAAAGCCTTGCTTTATTGCCATTGGATCTCCTTTCCTTAGGACTGTCTTAAAGATACATATTGAACCTGAGCTACTGCATAAGGATTCTGTCCTTAAAGTGGAAAGCAGACAAGATCTTATTTTCTATAAGGGTGGGAAACTAGTTCTTAGTAATAGTGCTCTGGCTAAATTCATCAGTGGTTACAAGAAATATGGGAGGATTGGTGAACTTTCAAAACTTTTACTTAGTATTCAAGGGGAACTAAATTCAGTGGCAGGGTCCAGTTTGTGTTCTGATGTAATTGGTGCTTGTATTCAGTTAGGATGGCTTGAGTGTGCTCATGACATTTTGGATGATGTTGAGGCCACTGGTTCTCCAATGGGCCGGGATACATATATGTTACTTGTGTCAGCATATCAGAAGGGGGGAATGCAAAGAGAAACAAAGGCACTACTGAAACAAATGAAAAAGGTTGGTTTGGACAAAGGATTATCTGATGATGCTATTGATGAACACAACCTCTGTGAAGAAACATTAAATTCACTTGGTAAAGCTGATTTGGCAATCGCCTTGGTTCAAATATTGAAAGATGAAGATCAGACAGTTTTTCCTTTGGTGTATAACTTAAATTCTTCCATTTTCTTTTTCTGCAAGGCCGGAATGATAGAGGATGCACTAAGGGCATATAGAAGAATGGTCGACATGAAAATTCAACCCACAAGTCAAACTTTTGCTTTTTTGATGTGTGGATATTCTTCTCTTGGTATGTATCGGGAGATCACAATTTTGTGGGGAGACATTAAGAGATTCATGAGGAGTGGCAATTTAGTGGGAAATAGAGATCTGTATGAGTTACTGCTGCTAAATTTTCTTCGAGGTGGTTACTTCGAGAGAGTGCTGGAGGTCATTAGCCATATGAGAGACCATAACATGTATCCTGACAAATGGATGTACAAAAATGAGTTCCTTAGACTTCATAAGAATCTTTATAGGAGCTTAAAGGCATCAAATACAAGAACTGAAGCACAAAGCAAACGGCTTGAGCATGTTCAAGAATTTAGGAAATGGCCCATTGTTACACTCATGGGAGGAACACCATTTTGTGTGAGACAATGA 2001 0.3798 MVLPLTKFILFRNHFFRKFSPLHRIFQGHVCFEQFPFLQKFSTSGHCERLSWERSTEEILLGKLKFALRNHQVQEAWESFHDFRSLYGYPEIVREKSGLLHADTLTKLALSLARLQMTCPASVVLRLMLDKGCVPSMHLLSLVVFHIAKTEIGTYLASNYLFQVCDFYNCLNDKKGNHAVKVELDTLVFNLVLDACVRFKLSLKGLSLIELMSMTGTVADAHSIVIISQILEMNGLRDELKELKDHIGRVSSVYVWHYRQFYDSLLSLHFKFNDIDAAAKLVLDMTSSHNYDVKKECEKHLQKPCFIAIGSPFLRTVLKIHIEPELLHKDSVLKVESRQDLIFYKGGKLVLSNSALAKFISGYKKYGRIGELSKLLLSIQGELNSVAGSSLCSDVIGACIQLGWLECAHDILDDVEATGSPMGRDTYMLLVSAYQKGGMQRETKALLKQMKKVGLDKGLSDDAIDEHNLCEETLNSLGKADLAIALVQILKDEDQTVFPLVYNLNSSIFFFCKAGMIEDALRAYRRMVDMKIQPTSQTFAFLMCGYSSLGMYREITILWGDIKRFMRSGNLVGNRDLYELLLLNFLRGGYFERVLEVISHMRDHNMYPDKWMYKNEFLRLHKNLYRSLKASNTRTEAQSKRLEHVQEFRKWPIVTLMGGTPFCVRQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01366 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Gma17g01366 666 TIGRFAM PPR: pentatricopeptide repeat domain 511 535 IPR002885 -
Gma17g01366 666 Gene3D Tetratricopeptide repeat domain 342 467 IPR011990 GO:0005515
Gma17g01366 666 Gene3D Tetratricopeptide repeat domain 468 655 IPR011990 GO:0005515
Gma17g01366 666 Pfam PPR repeat 511 531 IPR002885 -
Gma17g01366 666 Gene3D Tetratricopeptide repeat domain 59 309 IPR011990 GO:0005515
Gma17g01366 666 PANTHER BNAC05G43320D PROTEIN 16 91 - -
Gma17g01366 666 PANTHER BNAC05G43320D PROTEIN 92 651 - -
Gma17g01366 666 PANTHER OS07G0495300 PROTEIN 16 91 - -
Gma17g01366 666 PANTHER OS07G0495300 PROTEIN 92 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01366 Gma-Chr17 12580145 12582901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01366 393 613 Miscellaneous Gene Families AT4G11690 20.814 8.05e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01366 - - gmx:100812849 1291.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01366 17 12580145 12582901 Gma17g01366 17 12580145 12582901 ECH