Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01197 ATGATGAGGGGTGCGGAATACGAGCGTGTGCTAAGGTACTTCGATGAAGACGGTGATGGAAAGATTTCACCCTCAGAGCTAAGGAACAGAATAGCAATGATGGGTGGTGAGGTTATGTTGAAGGAGGCTGAGATGGCGATCGAGGCGTTGGATTCGGACGGCGACGGGTTGTTGTGTTTGGACGATTTGATGAATCTGATGGAGGCTGCTGGAGAAGAAGAGAAGTTGAAGGATTTGAGAGAAGCCTTTGATATGTATGATACGGAGAGGTGTGGGTTTATTACTCCAAAGGCCTTGAAGAGGATGCTGAAGAAGTTAGGGGAATCTAAGTCAATGGTAGAGTGCAAAGTGATGATAAGTAGGTTTGATTTGAATGGGGATGGCATGCTTAGCTTTGAAGAGTTCAGAATTATGATGAAGTGA 423 0.4539 MMRGAEYERVLRYFDEDGDGKISPSELRNRIAMMGGEVMLKEAEMAIEALDSDGDGLLCLDDLMNLMEAAGEEEKLKDLREAFDMYDTERCGFITPKALKRMLKKLGESKSMVECKVMISRFDLNGDGMLSFEEFRIMMK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01197 140 Coils Coil 69 89 - -
Gma17g01197 140 CDD EFh 6 67 IPR002048 GO:0005509
Gma17g01197 140 Gene3D - 2 72 - -
Gma17g01197 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Gma17g01197 140 Gene3D - 73 140 - -
Gma17g01197 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Gma17g01197 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Gma17g01197 140 SUPERFAMILY EF-hand 6 140 IPR011992 -
Gma17g01197 140 SMART efh_1 78 106 IPR002048 GO:0005509
Gma17g01197 140 SMART efh_1 6 34 IPR002048 GO:0005509
Gma17g01197 140 SMART efh_1 114 140 IPR002048 GO:0005509
Gma17g01197 140 SMART efh_1 42 70 IPR002048 GO:0005509
Gma17g01197 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Gma17g01197 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Gma17g01197 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Gma17g01197 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gma17g01197 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Gma17g01197 140 CDD EFh 78 140 IPR002048 GO:0005509
Gma17g01197 140 Pfam EF hand 10 29 IPR002048 GO:0005509
Gma17g01197 140 Pfam EF hand 48 67 IPR002048 GO:0005509
Gma17g01197 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Gma17g01197 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01197 Gma-Chr17 10528791 10529761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01197 3 140 EF-hand Containing Proteins AT1G76650 45.652 4.57e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01197 K13448 - gmx:100816563 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00442 05 4207243 4207665 Gma17g01197 17 10528791 10529761 ECH
Gma17g01197 17 10528791 10529761 Gma17g01197 17 10528791 10529761 ECH
Gma17g01197 17 10528791 10529761 Gma05g00442 05 4207243 4207665 GST