Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01180 ATGGCTTCTTCTGTGTCATCCATGGTTTCTACCACCCTCCTCCTAATTACCATCTGCACACTGTCCTCACTTCTGTCAGTTGCATCTGCAGCAACAGAGGAGGGACGAACAAGGCCATTCAAAAGGGTCTATGCCTTTGGAGACTCTTTCACAGACACTGGCAACACCCAAAATGCAGAAGGTCCAAGTGGCTTTGGCCATGTTTCAAACTCTCCCTATGGAACCACTTTCTTTAACCACTCCACCAATAGGTACTCAGATGGTAGGCTTGTGATTGATTTTGTGGCTGAAGCACTTTCACTGCCTTACTTGCCCCCCTACCGTCATAGCAAAGGCAATGACACTTTTGGTGTTAACTTTGCTGTTGCTGGTTCCACAGCCATAAACCATTTGTTCTTTGTCAAGCACAACCTCTCCCTTGACATCACTCCTCAGTCCATCCAAACCCAGATGATATGGTTCAACAGGTACCTGGAGAGCCAGGACTGCCAAGAGTCAAAGTGCAATGATTTTGATGACACTCTATTTTGGTTTGGGGAGATTGGAGTCAATGACTATGCCTACACTCTTGGATCTACCGTCTCAGATGAAACCATAAGGAAGCTTGCAATCAGCAGTGTCTCAGGAGCTTTACAGACATTGCTTGAGAAGGGTGCCAAGTACCTAGTAGTGCAGGGTTTGCCTCTAACTGGGTGCTTGACATTGTCCATGTACCTGGCTCCACCAGATGATAGGGATGACATTGGATGTGTGAAAAGTGTCAACAACCAAAGCTACTACCACAACCTTGTGCTGCAAGACAAATTACAAGAATTCAGGAAACAGTACCCTCAAGCTGTCATACTTTATGCTGATTACTATGATGCCTACCGCACTGTCATGAAGAATCCAAGCAAATTCGGATTCAAAGAGACCTTCAACGTTTGCTGTGGATCGGGAGAACCACCTTACAACTTCACTGTGTTTGCCACATGTGGCACACCTAATGCCACTGTGTGCTCAAGCCCTTCTCAGTACATCAATTGGGATGGTGTTCACCTCACTGAGGCCATGTATAAAGTTATTTCTAGTATGTTTTTGCAAGGAAATTTCACCCAACCTCCGTTTAATTTTTTGTTGGGAAAAAAGGAGAGGGTGGGGTGA 1143 0.4558 MASSVSSMVSTTLLLITICTLSSLLSVASAATEEGRTRPFKRVYAFGDSFTDTGNTQNAEGPSGFGHVSNSPYGTTFFNHSTNRYSDGRLVIDFVAEALSLPYLPPYRHSKGNDTFGVNFAVAGSTAINHLFFVKHNLSLDITPQSIQTQMIWFNRYLESQDCQESKCNDFDDTLFWFGEIGVNDYAYTLGSTVSDETIRKLAISSVSGALQTLLEKGAKYLVVQGLPLTGCLTLSMYLAPPDDRDDIGCVKSVNNQSYYHNLVLQDKLQEFRKQYPQAVILYADYYDAYRTVMKNPSKFGFKETFNVCCGSGEPPYNFTVFATCGTPNATVCSSPSQYINWDGVHLTEAMYKVISSMFLQGNFTQPPFNFLLGKKERVG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01180 380 Pfam GDSL-like Lipase/Acylhydrolase 43 357 IPR001087 GO:0016788
Gma17g01180 380 PANTHER LIPASE/HYDROLASE FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 13 377 - -
Gma17g01180 380 Gene3D SGNH hydrolase 31 363 IPR036514 -
Gma17g01180 380 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 13 377 - -
Gma17g01180 380 SUPERFAMILY SGNH hydrolase 40 360 - -
Gma17g01180 380 CDD SGNH_plant_lipase_like 43 363 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01180 Gma-Chr17 10335896 10337683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01180 43 362 Acyl Lipid Metabolism Gene Families AT4G10950 26.946 6.36e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01180 - - gmx:100810163 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01180 17 10335896 10337683 Gma17g01180 17 10335896 10337683 ECH