Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01160 ATGAATCGTTTAAGGGCAATTGTTGTTAACCTGAGGTTCCTCGAGTCGCCACTCGCCAGCCGAGTCACTGCAACTCGGTCTCTCCTACTCACCCGGAACCAGGTGACTCATTTCTCTCTCTGCACTCCATCTCCCCTTTTGGATAACTCTCACCATTTTCTCCTTCCCAACATTCATCAAAATCTCTACTTTTCTTCGAAACCAAATTCCATTGTTGAACTTGTTTTGACCAGCGATTGGTCCAAGGGTTTAGAGCAAGAGTTAGAAAAATGCTATCCATCCATGACCCATGAAACTGTTGTTTACGTTTTGAAGCGGATGGAAGCAAACCCAGAAAAAGCTTGGTGTTTTTTCAATTGGGTCAGTGCCAAAGAATGGTATAGACCAAGTTCGTCACTGTATGGCTTAATTCTCAGGGTCTTGGCCACTGAGGAGACGATAAAACTATTTTGGATTACTCTACGGACTATGAAGACAAAAGGGTTTTATTTTGATGAAGAGATGTATTTTCCAATATTAGCGGGTTTTAAAAGAAAAAATATGAACAAGGATCGTGTGTCTCTTACCCGCTTCTATAGTCAGGGTATTCAGGAAAATGCAATGCAAATTGTTGTCACCAAGGTGGTTGATATCATTTCAGGGTCTGAATGGGGTGATGAGGTTATGAGTAATCTTGCAAAGCTTGAAATTCGGATGTCGGATAATTTTGTAACAAGGGTTTTGAAAGAGCTTAGAAATTGTCCTTTAAAGGCCTACGAGTTCTTTAATTGGGTTGGGAAGCAATCTGGTTATGAGCATGATACAGTGACTTACAATGCGATTGCAAGAGTTCTCGCGAGTACTGACTCAATTGAGAAGTTTTGGAGTGTGATTGAGGAGATGAAGAGTGTGGGTCATGAATTGGATATTGATACTTACATAAAGATATCAAAGAAGCTTCAAAAGAATAAGATGATGGAGGATGCTGTCAAGCTTTATGAGCTTACGATGGATGGTTCATACAAGCCTTCAGTTAAGGATTGCAGCCTTCTTTTGAAAAGCATCTCTGCAAGTGATGATCCAAACTTGGATTTAGTTTTCAGGGTTTCTAAGAAATATGAGTCAACCTGGCACACTCTCTCCAAGGCAATCTATGATGGAATCCACAGGTCTTTGTCAGGTGCTGGGAAACTTGATGAAGCTGAGAGTATTGTTAATCATATGAGAAATGCTGGCTATGAGCCTGATAACATCACATACAATCAAACAATTTTTGGATTTTGTAAGATGAGGAAGCTTGATGAAGCATGTAAAGTGCTGGAGGAGATGGAATCTTGTGGATTCATCCCTGAAATTAAGACTTGGACCATCTTGATCCAAGGGCATTGTGTTGCAAATGAAGTAGATAGGGCATTACTTTGTTTAAATAGGATGATTGAAAAGGGCTGCAATGCAGATGCTGCTGTTTTAGGTGTTCTAATAGGCAGTTTTCTTGGTCAAAAGAGAATAGATGATGCATACAAGTTGCTTGTAGAGATTGTTAGTAAGCATGGTACATCTCCGAGGCACGGTACATATGCGAAACTGATTGATAACCTACTGGGAATTGGGAAACTTGAGGAGGCACTTGATCTTCATTGTCTGATGAGGAATCACGAATTCACTCCAATCATTGAACCCTTTGTGCAGTATATTTCTAAGTTTGGGTCTATAGAAGATGCTATAAAATTCCTGAAGAGTAAGGGAACTCCCCGGTCCCATTCGGTCTACTTTCGTGTTTTTAAATCTTTACTCGGAAATGGTAGACTCTCTGATGCCAAAGATCTATTGAGCAAGATCCCCTATATAAGTAAACGTAAAAAAATCCTTGAGCTCTTTAGTTCAATGGAGAATTGCACGGTGCACGGCCTCAGTCATATCAGCCAGTAA 1908 0.4036 MNRLRAIVVNLRFLESPLASRVTATRSLLLTRNQVTHFSLCTPSPLLDNSHHFLLPNIHQNLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPSMTHETVVYVLKRMEANPEKAWCFFNWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMYFPILAGFKRKNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEIRMSDNFVTRVLKELRNCPLKAYEFFNWVGKQSGYEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVGHELDIDTYIKISKKLQKNKMMEDAVKLYELTMDGSYKPSVKDCSLLLKSISASDDPNLDLVFRVSKKYESTWHTLSKAIYDGIHRSLSGAGKLDEAESIVNHMRNAGYEPDNITYNQTIFGFCKMRKLDEACKVLEEMESCGFIPEIKTWTILIQGHCVANEVDRALLCLNRMIEKGCNADAAVLGVLIGSFLGQKRIDDAYKLLVEIVSKHGTSPRHGTYAKLIDNLLGIGKLEEALDLHCLMRNHEFTPIIEPFVQYISKFGSIEDAIKFLKSKGTPRSHSVYFRVFKSLLGNGRLSDAKDLLSKIPYISKRKKILELFSSMENCTVHGLSHISQ 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01160 635 PANTHER OS01G0970900 PROTEIN 1 622 IPR044578 GO:0008380
Gma17g01160 635 Pfam PPR repeat 382 405 IPR002885 -
Gma17g01160 635 Pfam PPR repeat 269 298 IPR002885 -
Gma17g01160 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Gma17g01160 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Gma17g01160 635 Gene3D Tetratricopeptide repeat domain 78 203 IPR011990 GO:0005515
Gma17g01160 635 Gene3D Tetratricopeptide repeat domain 219 362 IPR011990 GO:0005515
Gma17g01160 635 Gene3D Tetratricopeptide repeat domain 493 609 IPR011990 GO:0005515
Gma17g01160 635 Gene3D Tetratricopeptide repeat domain 363 492 IPR011990 GO:0005515
Gma17g01160 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Gma17g01160 635 Pfam PPR repeat family 411 456 IPR002885 -
Gma17g01160 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Gma17g01160 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Gma17g01160 635 PANTHER OS01G0970900 PROTEIN 1 622 - -
Gma17g01160 635 TIGRFAM PPR: pentatricopeptide repeat domain 447 479 IPR002885 -
Gma17g01160 635 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Gma17g01160 635 TIGRFAM PPR: pentatricopeptide repeat domain 383 409 IPR002885 -
Gma17g01160 635 TIGRFAM PPR: pentatricopeptide repeat domain 411 443 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01160 Gma-Chr17 10114987 10116894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01160 377 630 Glycosyltransferase AT1G05670 27.308 5.29e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01160 - - gmx:100801257 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01160 17 10114987 10116894 Gma17g01160 17 10114987 10116894 ECH