Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00757 ATGAACGGCTTAAGAAGTGAAAGAGCCCCTCTCTTGGAGGCTGAGCGTGCTGGAAGAGGAAAGAGGGATGGTGCCTCGGAAGGTCAAGCCTCAGACCTTGAGCATGGTGATGCAGTGCCGGCGGCAAATGTGGGATTCTGTAGGGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAGTTGGTGATCGGTACTGTGGCTCTGTTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTAGGGAAATGAAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATCTTTCTGGTCGTTGTCTTCGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGACTGAGAAAGAATTTGTTCAGTCATCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAGCTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTGAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTTGCTTCATCAATAGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAGTAACACGCTACTCAGAGAAAAAAATTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTCATTATAGTTGTTATATATGGAGCTAATTTGACAATCAAGGGTTCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCGGGAGATAAATGTCCACTGGGTGATCACGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCAGTGCTCAAGGGCATTACATTGAAACTGCATCCAGGAACAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTGATTGAAAGATTTTATGATCCAACCAAGGGAAAGATTGTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAATGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCTGAAAGCGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCCACAGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGAGGCAACCATGAAGAGCTTCTCAGCAAGAACGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAGCCGAAATCTCGGTTTAG 1866 0.4293 MNGLRSERAPLLEAERAGRGKRDGASEGQASDLEHGDAVPAANVGFCRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSREMKTPEEKDEALNAVKNTILEIFLVVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEVTRYSEKKIVGLFSGGLNAASTLSVIIVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDHDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGTKVALVGPSGGGKSTIANLIERFYDPTKGKIVLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNDVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLSKNGVYTALVKRQLQTTKAEISV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00757 621 CDD ABC_6TM_AtABCB27_like 63 347 - -
Gma17g00757 621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma17g00757 621 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 615 - -
Gma17g00757 621 CDD ABC_MTABC3_MDL1_MDL2 373 611 - -
Gma17g00757 621 SMART AAA_5 400 594 IPR003593 -
Gma17g00757 621 Pfam ABC transporter 391 541 IPR003439 GO:0005524
Gma17g00757 621 MobiDBLite consensus disorder prediction 1 33 - -
Gma17g00757 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 610 IPR003439 GO:0005524
Gma17g00757 621 Gene3D ABC transporter type 1, transmembrane domain 37 273 IPR036640 GO:0005524|GO:0016021
Gma17g00757 621 Gene3D ABC transporter type 1, transmembrane domain 274 370 IPR036640 GO:0005524|GO:0016021
Gma17g00757 621 Gene3D - 371 616 IPR027417 -
Gma17g00757 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 611 IPR027417 -
Gma17g00757 621 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524
Gma17g00757 621 Pfam ABC transporter transmembrane region 60 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma17g00757 621 SUPERFAMILY ABC transporter transmembrane region 48 353 IPR036640 GO:0005524|GO:0016021
Gma17g00757 621 MobiDBLite consensus disorder prediction 9 30 - -
Gma17g00757 621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 615 IPR039421 -
Gma17g00757 621 PIRSF ABC_prm/ATPase_B 8 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00757 Gma-Chr17 6362398 6369407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00757 62 611 Calmodulin-binding Proteins AT2G36910 37.368 3.47e-100 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00757 - - gmx:100810510 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00757 17 6362398 6369407 Gma17g00757 17 6362398 6369407 ECH
Gma17g00757 17 6362398 6369407 Gma05g00187 05 1759122 1764919 GST