LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma05g00187	ATGAACGGCTTAAGAAGTCAAAGAGCCCCTCTCTTGGAGGCTGAGGGTGCTGGAAGAGGAAAGAGGGATGGTGCCGCGGAAGGTCAAGTCTCAGACCTTGAACATGGTGATGCAGTGCCGGCGGAAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAATTAATGATTGGTACAGTGGCTCTGTTGATTGCAGCCACATCAAGTATATTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAAGGGAAATGCAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATTTTTCTGATCGTTGTCTTTGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACTCAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTAAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCATCAATAGCTGAGGAGTCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAACAACACGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGTCTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACAATAAAGGGTTACATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCCGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCAGGAGATAAATGTCCACTTGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCGGTGCTCAAGGGCATTACATTGAAGCTGCATCCAGGATCAAAGGTTGCTCTTGTCGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGGAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAACGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAACGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCAGAAAGTGAATACCTAGTGCAGGATGCCATGGAATCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCAACTGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGAGGCAACCATGAAGAGCTTCTCAACAAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAACCGAAATCTCGGTCTAG	1902	0.4201	MNGLRSQRAPLLEAEGAGRGKRDGAAEGQVSDLEHGDAVPAENVGFCRVLSLAKPEAGKLMIGTVALLIAATSSILVQKFGGKIIDIVSREMQTPEEKDEALNAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYETTRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGANLTIKGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDQDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNDVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLNKNGVYTALVKRQLQTTKTEISV	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma05g00187	633	Pfam	ABC transporter transmembrane region	60	333	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Gma05g00187	633	Gene3D	-	383	628	IPR027417	-
	Gma05g00187	633	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	385	622	IPR003439	GO:0005524
	Gma05g00187	633	SMART	AAA_5	412	606	IPR003593	-
	Gma05g00187	633	Gene3D	ABC transporter type 1, transmembrane domain	112	382	IPR036640	GO:0005524\|GO:0016021
	Gma05g00187	633	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	3	627	IPR039421	-
	Gma05g00187	633	CDD	ABC_MTABC3_MDL1_MDL2	385	623	-	-
	Gma05g00187	633	CDD	ABC_6TM_AtABCB27_like	63	359	-	-
	Gma05g00187	633	SUPERFAMILY	ABC transporter transmembrane region	48	365	IPR036640	GO:0005524\|GO:0016021
	Gma05g00187	633	Pfam	ABC transporter	403	553	IPR003439	GO:0005524
	Gma05g00187	633	MobiDBLite	consensus disorder prediction	1	31	-	-
	Gma05g00187	633	ProSitePatterns	ABC transporters family signature.	525	539	IPR017871	GO:0005524
	Gma05g00187	633	PIRSF	ABC_prm/ATPase_B	13	632	-	-
	Gma05g00187	633	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	376	623	IPR027417	-
	Gma05g00187	633	MobiDBLite	consensus disorder prediction	15	30	-	-
	Gma05g00187	633	PANTHER	ABC TRANSPORTER B FAMILY MEMBER 25	3	627	-	-
	Gma05g00187	633	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	62	351	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma05g00187	Gma-Chr5	1759122	1764919	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma05g00187	62	632	Calmodulin-binding Proteins	AT2G36910	36.960	1.07e-103	340

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma05g00187	-		-	gmx:100818615	1184.09

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma05g00187	05	1759122	1764919	Gma05g00187	05	1759122	1764919	ECH
	Gma17g00757	17	6362398	6369407	Gma05g00187	05	1759122	1764919	GST