Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00732 ATGAATCCTGAGAACTTTACTCACAAGACCAATGAGGCTCTTGCGTCGGCGCACGATCTCGCAATGAGTTCAGGCCACGCGCAATTCACTCCCATCCACTTAGCCCACGCGCTGATTTCCGATCCCAACGGCATTTTCGTGCAAGCAATAAACAGTGCGGGCGGCGGTGATGAATCTGCACGCGCCGTGGAGCGAGTGTTGAACCAGGCATTGAAGAAGCTACCCTGCCAGTCCCCTCCCCCGGACGAGGTTCCTGCGAGCACGAATCTCGTGAAGGCCATAAGAAGAGCACAGGCTGCGCAGAAATCACGCGGCGACACGCATTTGGCCGTTGATCAATTGATCCTCGGAATCCTCGAGGACTCCCAAATCGGAGAGTTGCTGAAGGAAGCCGGTGTTGCGGCGGCGAGGGTAAAGTCGGAAGTGGAGAAGCTTCGTGGGAAGGAAGGGAAGAAGGTTGAGAGTGCTTCCGGGGATACTAATTTTCAGGCTTTGAAGACTTATGGGCGTGACCTTGTTGAACAAGCGGGGAAGCTTGACCCTGTTATTGGCCGTGACGAAGAGATAAGAAGGGTTGTGAGGATTCTATCACGGAGGACTAAGAATAATCCGGTTCTTATTGGAGAACCGGGTGTGGGAAAAACCGCGGTTGTGGAAGGGTTGGCGCAGAGGATAGTAAGAGGAGATATTCCAAGCAACCTTGCTGATGTGAGGCTTATTGCATTGGATATGGGTGCGTTGGTCGCGGGTGCCAAGTATAGAGGGGAGTTTGAAGAGAGGTTGAAGTCTGTTTTGAAGGAAGTGGAGGATGCTGATGGGAAGGTGATACTCTTCATTGATGAGATTCATTTGGTTCTTGGCGCTGGTAGAACTGAAGGGTCCATGGATGCTGCTAATCTGTTTAAACCTATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGTGCCACAACGCTTGAGGAGTATAGGAAGTATGTGGAGAAGGATGCTGCATTTGAGAGGAGGTTCCAACAGGTTTTTGTTGCGGAACCGAGTGTGGTGGATACCATTAGCATTCTTCGTGGGTTGAAAGAGAGGTATGAAGGCCATCATGGTGTTAGAATTCAGGACCGGGCTTTGGTTATGGCAGCTCAATTGTCTAGCCGGTATATTACTGGGCGTCATCTTCCTGACAAGGCAATTGATTTGGTTGACGAGGCTTGTGCAAATGTGAGGGTGCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGCTAGAGGTGGAACTTCATGCTCTGGAGAAAGAGAAGGACAAGGCTAGCAAAGAGACAGAGATAGAGATAGAGATAAAGACAATATTTATAATGGATTCTCGTTTACATGCTTTTGAAGTTAATAATTGGAACACCAGGGCTTCCATCATCACCCATTGTGGGAAACTTGTCCCCACATGGATCCTGTGTCACATCATGCACCTTTGTTTGGGCTTAGTTGATGTCATGGTGGCGGGATCCACCTCTGTGACGGAGTAA 1527 0.4964 MNPENFTHKTNEALASAHDLAMSSGHAQFTPIHLAHALISDPNGIFVQAINSAGGGDESARAVERVLNQALKKLPCQSPPPDEVPASTNLVKAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGELLKEAGVAAARVKSEVEKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDIPSNLADVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEDADGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVVDTISILRGLKERYEGHHGVRIQDRALVMAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKETEIEIEIKTIFIMDSRLHAFEVNNWNTRASIITHCGKLVPTWILCHIMHLCLGLVDVMVAGSTSVTE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00732 508 Pfam AAA lid domain 345 441 IPR041546 -
Gma17g00732 508 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Gma17g00732 508 Pfam ATPase family associated with various cellular activities (AAA) 205 321 IPR003959 GO:0005524|GO:0016887
Gma17g00732 508 Pfam Clp amino terminal domain, pathogenicity island component 17 67 IPR004176 -
Gma17g00732 508 Pfam Clp amino terminal domain, pathogenicity island component 97 147 IPR004176 -
Gma17g00732 508 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 458 - -
Gma17g00732 508 ProSiteProfiles Clp repeat (R) domain profile. 3 148 IPR004176 -
Gma17g00732 508 PANTHER ATP-DEPENDENT CLP PROTEASE 4 458 - -
Gma17g00732 508 SMART AAA_5 200 345 IPR003593 -
Gma17g00732 508 CDD AAA 183 343 - -
Gma17g00732 508 Gene3D - 345 475 IPR027417 -
Gma17g00732 508 Coils Coil 407 441 - -
Gma17g00732 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 448 IPR027417 -
Gma17g00732 508 Gene3D - 3 149 IPR036628 -
Gma17g00732 508 Gene3D - 151 344 IPR027417 -
Gma17g00732 508 ProSitePatterns Chaperonins clpA/B signature 1. 296 308 IPR018368 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00732 Gma-Chr17 6193513 6197719 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00732 K03695 - gmx:100795424 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00732 17 6193513 6197719 Gma17g00732 17 6193513 6197719 ECH