Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00309 ATGAACGCCCTCCCTTCATCTTCCTCTTCCACCTTCACTTTCTTAACTCAGTCCAAGAACCCCAATCATCTCTTCAAGTTGACACATAAAGTACCCATTTTACCCCTACACTCACCTTCTCCATGTTGCTCCCTCAGTGACTCGTCCTCCTCGTCGACCACGGTGCTGGACAAAAATGCCCTTTCACCCGAACAGAATTCCCGCATTGCAGTTTCGCCGGATGACTCGAGCTTCGAGGAAGCCCTCGTGATTCGCCGGCCGGTGACGGATTTTTCCGCCGAATACTCCGGCGAGGAGGAGGAAGAAGAGAAGGAGACAAAAGAAGAAGAAGATGACCCGAAGGCTTCGGCGATCGACGAGGGGCTCGCGAGATTTGCGAAGAAGATGCCGATGTTTGAGCCAGAGAGGGTCGAATCCAAAGAGAGGCCACTCGCAATTAATTTGGACTTGGCGTTATACAGGGCGAAGCTTTTGGCTCGCAGAACCTTTCAGTATGAAAAGGCAGAGTCATTACTTCGTAAGTGTATAAGCCTTTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATATTGAGCAAGCAATCAAAAACAAGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTAGAAATGCAAATGGGAAATATCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACAGTTGCTGACAAGAGGCATGTTGCTGCTTGGCATGGATGGGCAAATCTAGAATTAAAGCAGGGAAATCTAAAGAAGGCAAGGATTCTACTTGGTAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCACGGCTTGAAGCTAGAGCAAATAGATATCTGCAGGCTCGATATTTATTCAATCAGGCCACTAAGTGTAATCCTAATAGTTGTGCTAGTTGGCTTAGTTGGGCGCAAATGGAGGTGGAGCAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTATGCTTGGCATGTATGGGGCGTTTTTGAAGCTAACATGGGCAACATTGACATGGGAAGAAAACTTTTAAAGATAGGTCATAATCTAAACCCAAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAATACTCAACTGCAAACGTTGCCCGGGTTTTGTTCAGGAGAGCATCTGAATTGAATCCAAGGCACCAGCCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAACGAAACTTGAATAAAGCCAGACAATTATACCAAAAAACTTTATCAATTGATCAAAACAGTGAAACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTCTGGAGCATAGGGTTGGCAATCTTTCAGCTGCTCGTCGATTATTTAAATCATCGTTGAATATAAATTCTCAGAGTTACGTGACATGGATGACTTGGGCATCAGTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCCTAGGTATTTTAGACCCGGCTATTGACAGTTTAAAGAGAATCCTCAAGCTGAACCCAAATTCGTACAACATGCCACTGGATTCTTTGAGGAACATTGCGGGAACAAATAAAAACAGAGTTGATTCTTCTAGTGAAGACGAGGATGATGATGATGCAAATGGAAAAAGTGACTTTGATTTGGATGCTTTCATTAAGCAAAAGCTAACATTAGATTTGTCCAATCTAGAAATTCAGTTGGAAGAACCAAAATTTTATTCTGTGAAGAGAAGTACGTCTCCTAGAAGGATATGGCGACGATCAATTAATGAAATTGCTGAAGTGCAAGTCACACAGTAA 1944 0.4408 MNALPSSSSSTFTFLTQSKNPNHLFKLTHKVPILPLHSPSPCCSLSDSSSSSTTVLDKNALSPEQNSRIAVSPDDSSFEEALVIRRPVTDFSAEYSGEEEEEEKETKEEEDDPKASAIDEGLARFAKKMPMFEPERVESKERPLAINLDLALYRAKLLARRTFQYEKAESLLRKCISLWPEDGRPYVVLGKILSKQSKTSEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAATVADKRHVAAWHGWANLELKQGNLKKARILLGKGLQYCGQNEYIYQTLARLEARANRYLQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVQASPKNRYAWHVWGVFEANMGNIDMGRKLLKIGHNLNPRDAVLLQSLALLEYQYSTANVARVLFRRASELNPRHQPVWFAWGWMEWKERNLNKARQLYQKTLSIDQNSETAARCLQAWGVLEHRVGNLSAARRLFKSSLNINSQSYVTWMTWASVEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLGILDPAIDSLKRILKLNPNSYNMPLDSLRNIAGTNKNRVDSSSEDEDDDDANGKSDFDLDAFIKQKLTLDLSNLEIQLEEPKFYSVKRSTSPRRIWRRSINEIAEVQVTQ 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00309 647 SUPERFAMILY TPR-like 119 398 IPR011990 GO:0005515
Gma17g00309 647 SMART tpr_5 252 285 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 218 251 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 459 492 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 149 182 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 422 455 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 183 216 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 320 353 IPR019734 GO:0005515
Gma17g00309 647 SMART tpr_5 286 319 IPR019734 GO:0005515
Gma17g00309 647 SMART hat_new_1 402 434 IPR003107 GO:0006396
Gma17g00309 647 SMART hat_new_1 473 505 IPR003107 GO:0006396
Gma17g00309 647 SMART hat_new_1 334 366 IPR003107 GO:0006396
Gma17g00309 647 SMART hat_new_1 197 230 IPR003107 GO:0006396
Gma17g00309 647 SMART hat_new_1 266 298 IPR003107 GO:0006396
Gma17g00309 647 SMART hat_new_1 232 264 IPR003107 GO:0006396
Gma17g00309 647 SMART hat_new_1 300 332 IPR003107 GO:0006396
Gma17g00309 647 Pfam Tetratricopeptide repeat 227 277 - -
Gma17g00309 647 Pfam Tetratricopeptide repeat 292 353 - -
Gma17g00309 647 Gene3D Tetratricopeptide repeat domain 93 392 IPR011990 GO:0005515
Gma17g00309 647 Gene3D Tetratricopeptide repeat domain 393 563 IPR011990 GO:0005515
Gma17g00309 647 MobiDBLite consensus disorder prediction 41 72 - -
Gma17g00309 647 MobiDBLite consensus disorder prediction 93 115 - -
Gma17g00309 647 MobiDBLite consensus disorder prediction 94 108 - -
Gma17g00309 647 ProSiteProfiles TPR repeat profile. 320 353 IPR019734 GO:0005515
Gma17g00309 647 SUPERFAMILY TPR-like 322 560 IPR011990 GO:0005515
Gma17g00309 647 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 7 637 IPR044624 GO:0003729|GO:0006397
Gma17g00309 647 MobiDBLite consensus disorder prediction 571 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00309 Gma-Chr17 2484728 2489483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00309 - - gmx:100819232 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00309 17 2484728 2489483 Gma17g00309 17 2484728 2489483 ECH