Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00303 ATGGCGGAGAAACACAACCTTAAGAATCCAGCTGTGAAGCGGATTCTCCAAGAGCTCAAGGAGATGCAATCAAACCCATCCGATGACTACCTGAGCCTCCCTCTTGAGGAAAATATATTTGAATGGCAATTTGCTATAAGGGGGCCTCGTGATACTGAATTTGAAGGTGGTATTTATCACGGACGGATTCAGCTGCCTTCAGAATATCCCTTCAAACCTCCTTCGTTTATGTTGCTCACACCTAGTGGCCGTTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTAAGGACTGCTTTAGTCGCACTGATTGCATTCATGCCCACCAACCCAAATGGCGCGTTGGGCTCATTAAACTACAAGAAAGAAGACAGGCGTGCCTTGGCCATTAAATCCCGTGAAGCACCTCCAAAATTTGGGACTCCTGAACGTCAAAGACTGATTGATGAGATACACGAGTATATGCTAAGCAAGTCATCCCCCGTTCCACAACTTGCCCCCTCACAAGTTTCTGAAGAACATTCCAAAACTGAGGAGGCTGAGGCTGAGGCCCAGGTTAATTTACATAATCCTGAAGCTTTACCTGCGGGAGTGGAGATTCCAGATCAAGCAGGCGACAGAGTTGTTGAAGAACAAGAACTCCCTGTCAATGTTAATTCTAACCCTGCAGGAGTTGAAGCTTCAATGGATAATTCATCCAGCGGCTCAAGTAACCAGTTGCTCCAAAAGTCAGATGCAAGGGTTCAAAATCTGAAACCAGAGACAAGGATTCAAAAATCTGACGATCGATTGTTTACACTTGCTGCTATTGGGCTTACTATAGCAATTGTGGTTCTTTTGCTGAAGAAGTTCATTAAATCTACAGAATATGGTGCTGTTTTCATGGATGAATCTTAG 936 0.4466 MAEKHNLKNPAVKRILQELKEMQSNPSDDYLSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPSGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLNYKKEDRRALAIKSREAPPKFGTPERQRLIDEIHEYMLSKSSPVPQLAPSQVSEEHSKTEEAEAEAQVNLHNPEALPAGVEIPDQAGDRVVEEQELPVNVNSNPAGVEASMDNSSSGSSNQLLQKSDARVQNLKPETRIQKSDDRLFTLAAIGLTIAIVVLLLKKFIKSTEYGAVFMDES 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00303 311 SUPERFAMILY UBC-like 11 129 IPR016135 -
Gma17g00303 311 MobiDBLite consensus disorder prediction 229 261 - -
Gma17g00303 311 SMART ubc_7 13 173 - -
Gma17g00303 311 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Gma17g00303 311 Gene3D Ubiquitin Conjugating Enzyme 1 174 IPR016135 -
Gma17g00303 311 CDD UBCc 12 151 IPR000608 -
Gma17g00303 311 MobiDBLite consensus disorder prediction 229 267 - -
Gma17g00303 311 PANTHER BNAC01G21910D PROTEIN 6 311 - -
Gma17g00303 311 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 311 - -
Gma17g00303 311 MobiDBLite consensus disorder prediction 171 197 - -
Gma17g00303 311 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00303 Gma-Chr17 2443935 2446827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00303 3 310 Miscellaneous Gene Families AT3G17000 61.801 9.56e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00303 K10578 - gmx:100804291 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00303 17 2443935 2446827 Gma17g00303 17 2443935 2446827 ECH