Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01732 ATGGCAAGACAAGCTCTGACCAAATTGCTGTCCTCGATCGCCTCGCGCCGCCACCATGGCCTCCGCCACTTCTCGGCGGCCTCGCCGGCGGTCTTCGTCGACAAGAGCACGCGCGTGATCTGCCAAGGCATCACCGGCAAAAACGGCACCTTCCACACCGAACAAGCCATCGAATACGGCACCAACATGGTTGGTGGTGTGACTCCTAAGAAAGGTGGAACCGAACACTTGGGCCTTCCCGTCTTCAACACCGTTGCCGAGGCGAAGGCGGAGACTAAGGCCAACGCTTCCGTCATCTACGTTCCTCCGCCGTTCGCCGCGGCCGCCATCATGGAGGCCATGGAGGCTGAACTGGATCTCGTCGTCTGCATCACAGAGGGCATTCCCCAGCACGACATGGTTAGGGTTAAAGCAGCACTTAACAGGCAGTCCAAGACTCGTTTGATAGGACCAAACTGCCCTGGCATTATCAAGCCGGGGGAATGCAAAATTGGAATCATGCCAGGTTATATTCATAAGCCTGGTCGCATAGGAATCGTCTCTCGTTCTGGTACCTTGACATATGAAGCGGTTTTCCAAACGACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGATCCCTTTAATGGAACAAACTTCGTTGACTGCCTTCAGAAGTTCCTAACTGATCCTCAAACAGAAGGTATCATTCTTATAGGAGAGATAGGAGGAACTGCCGAAGAGGATGCTGCTGCACTAATTAAGGAGAGTGGAACTGAGAAGCCTGTTGTTGCTTTTATTGCTGGTTTAACTGCTCCCCCTGGTCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAGGGCACTGCACAAGACAAAATTAAAACCCTCAGGGAAGCTGGGGTCACAGTTGTGGAGTCCCCTGCCAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCAGAGGGGCTTGGTTCAATAG 978 0.5297 MARQALTKLLSSIASRRHHGLRHFSAASPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLQKFLTDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01732 325 PRINTS Succinyl-CoA synthase signature 110 127 - -
Gma16g01732 325 PRINTS Succinyl-CoA synthase signature 206 224 - -
Gma16g01732 325 PRINTS Succinyl-CoA synthase signature 237 250 - -
Gma16g01732 325 PRINTS Succinyl-CoA synthase signature 270 287 - -
Gma16g01732 325 Pfam CoA binding domain 34 127 IPR003781 -
Gma16g01732 325 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 6 324 - -
Gma16g01732 325 PIRSF SucCS_alpha 26 321 IPR005810 GO:0003824
Gma16g01732 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 151 IPR036291 -
Gma16g01732 325 Pfam CoA-ligase 180 301 IPR005811 GO:0003824
Gma16g01732 325 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 181 210 IPR033847 -
Gma16g01732 325 Gene3D - 30 149 - -
Gma16g01732 325 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 6 324 - -
Gma16g01732 325 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 29 318 IPR005810 GO:0003824
Gma16g01732 325 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 266 279 IPR017440 -
Gma16g01732 325 SUPERFAMILY Succinyl-CoA synthetase domains 152 320 IPR016102 -
Gma16g01732 325 Gene3D - 150 323 IPR016102 -
Gma16g01732 325 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 32 317 IPR005810 GO:0003824
Gma16g01732 325 SMART CoA_binding_2 32 128 IPR003781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01732 Gma-Chr16 38312245 38316791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01732 118 320 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 1.46e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01732 K01899 - gmx:100815484 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01732 16 38312245 38316791 Gma09g01553 09 40648103 40652765 GST