Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01682 ATGAAGCCAAACCTGAACGAACATGTGTTAGACACACTGAGCAAGAGCAACCACCTGAACCATCTCAAACAACTCCAAGCATACCTCACCACTCTGGGCCACGCCCACACTCACTTCTACGCCTTCAAGCTCATTCGCTTCTGCACCCTCACTCTCTCCAACCTCACCTACGCGCGCCTCATCTTCGACCACATTCCTTCTCTCAACACCCACCTCTTCACCGCCATGATCACCGCCTACGCCGCCCATCCCGCCACCCACCCCTCCGCTCTCTCCCTCTTCCGCCATATGCTCCGCTCCCAACCCCCCCGCCCCAACCACTTCATCTTCCCCCACGCGCTCAAAACGTGCCCGGAGTCATGCGCCGCGGAATCCCTGCATGCCCAGATCGTTAAATCCGGGTTTCACGAATACCCAGTTGTGCAAACGGCTCTTGTTGACTCCTACTCCAaggagtatgggattgagccgcagattgagcactatgggtgtttgatagaccttcttggtcgagcagggaggtttgatgaggcaatggatgttgtcaagggtatgagcatggaaccagacgaggttgtttggggctcattgcttaatggatgtaaggttcatGGCCGAACAGATTTGGCTGAATTTGCTGCGAAAAAACTGATTGAAATAGATCCACATAATGGAGGTTATAGGATTATGTTGGCTAATGTGTATGGGGAGTTGGGAAAGTGGGATGAAGTGAGGAATGTGTGGAGGACATTGAAGCAGCAAAAGTCTTATAAAGTTCCAGGGTGCAGCTGGATTGAGGTGGATGACCAGGTTCATCAGTTCTATTCTCTTGATAAATCAAATCCGAAGACAGAAGACTTGTACATTGTCTTGGAAAGTCTAGTTGGTTTTAGAAATGAAGTCATGGGTGAACCATAG 918 0.4194 MKPNLNEHVLDTLSKSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSNLTYARLIFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCPESCAAESLHAQIVKSGFHEYPVVQTALVDSYSKEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSYKVPGCSWIEVDDQVHQFYSLDKSNPKTEDLYIVLESLVGFRNEVMGEP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01682 305 Gene3D Tetratricopeptide repeat domain 85 281 IPR011990 GO:0005515
Gma16g01682 305 Pfam PPR repeat 161 185 IPR002885 -
Gma16g01682 305 Pfam E motif 207 266 IPR046848 -
Gma16g01682 305 TIGRFAM PPR: pentatricopeptide repeat domain 162 186 IPR002885 -
Gma16g01682 305 PANTHER - 2 151 - -
Gma16g01682 305 PANTHER - 151 297 - -
Gma16g01682 305 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 151 - -
Gma16g01682 305 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 151 297 - -
Gma16g01682 305 SUPERFAMILY TPR-like 50 248 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01682 Gma-Chr16 37825006 37826574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01682 58 295 Glycoside Hydrolase AT3G49170 31.933 3.71e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01682 - - gmx:100806937 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01682 16 37825006 37826574 Gma16g01682 16 37825006 37826574 ECH