Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01578 ATGGCAGTGCTATTTGCAACTCATGTTCTTCTCTTGATATTGTCCACTGCTACAACTCTCCAGTTCAGTGCAAGCAAGGCAGCAAGGCTCAATATGACTTGCAGTGAGAAGGAAAGAAATGCACTCCTCAGCTTCAAGCATGGACTAGCAGACCCTTCAAACAGGCTTTCATCGTGGTCTGACAAATCTGATTGCTGCACATGGCCAGGGATTCACTGCAACAACACTGGTCAGGTCATGGAAATCAATCTTGACACACCTGTGGGCTCTCCCTATAGggagttgagtggagagattagtccttctttgcttgaactaaaatatttgaatcggttgaacttgagttcaaattattttgttcttactccaataccaagcttcctaggctcaatggagagtctgagatacttggaccttagcttaagtgggttcatgggattaatccctcatcaactaggaaacctctcaaacctgcagcaccttaatcttggatacaattatgctcttcagatagataaccttaattggctatcaaggctatcttccttggagtaccttgatttgagtggctcagacctTCATAAACAAGGTAACTGGCTTCAAGAACTGAGTTCACTTCCATCTCTTTCAGAATTACACTTGGAGAGCTGTCAAATTAATTACTTAGGACCACCAAAAGGAAAAACCAACTTCACACATCTCCAAGTCCTTGATCTTTCAAAtaacaatctcaatcagcaaatccctttatggctatttaatctctgcacaacccttgtccaacttaatttacacagtaaccttttacagggagaaattccaccaataatatcaagccttcagaacataaaaaatctagacctgcataacaaccaactcagtgggccacttccagattcattaggccaacttaagcatcttcaagttctagatctaagtaataatacctttacatgtccaattccctcaccatttgcaaacttgtcatccttgagaactttaaacctggctcacaaccgactgaatggaaccattcctaagagttttgagttcctcaaaaacctgcaggtattaaatcttggagctaattctttgactggtgatatgcctgtaactcttggaactctctcaaattttgtggcgttagacctttcatctaatttgttagaaggatctataaaagagtcaaattttgtaaaacttttgaaattaaaggaactacgtttgtcttggacaaacttgttcctcagtgtcaactctggatgggttcctccttttcagcttgaatatgttttactgagctcctttggaataggtcctatgtttccagaatggctaaaaaggcaaagttctgtaaaggttttgacaatgtctaaggcaggtattgcagacttggttccaagttggttttggaattggactttgcaaattgaattcctggatctgtcaaacaatctgttaagtggagacctatctaacatctctctaaattccagcgtcataaatttgagttctaatttgttcaagggtagattgccaagtgtgtctgcaaatgttgaagtgctgaatgttgccaataactcaatttccggaacaatttctccctttttatgtggaaaggaaaatgctactaataagttaagtgtgcttgatttttcaaatgatgtcttgtctggtgagcttggtcactgttgggtgcattggcaggctttggtgcatttgaacttgggtagtaacaatttgtctg 1747 0.1059 MAVLFATHVLLLILSTATTLQFSASKAARLNMTCSEKERNALLSFKHGLADPSNRLSSWSDKSDCCTWPGIHCNNTGQVMEINLDTPVGSPYRELSGEISPSLLELKYLNRLNLSSNYFVLTPIPSFLGSMESLRYLDLSLSGFMGLIPHQLGNLSNLQHLNLGYNYALQIDNLNWLSRLSSLEYLDLSGSDLHKQGNWLQELSSLPSLSELHLESCQINYLGPPKGKTNFTHLQVLDLSNNNLNQQIPLWLFNLCTTLVQLNLHSNLLQGEIPPIISSLQNIKNLDLHNNQLSGPLPDSLGQLKHLQVLDLSNNTFTCPIPSPFANLSSLRTLNLAHNRLNGTIPKSFEFLKNLQVLNLGANSLTGDMPVTLGTLSNFVALDLSSNLLEGSIKESNFVKLLKLKELRLSWTNLFLSVNSGWVPPFQLEYVLLSSFGIGPMFPEWLKRQSSVKVLTMSKAGIADLVPSWFWNWTLQIEFLDLSNNLLSGDLSNISLNSSVINLSSNLFKGRLPSVSANVEVLNVANNSISGTISPFLCGKENATNKLSVLDFSNDVLSGELGHCWVHWQALVHLNLGSNNLS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01578 582 SUPERFAMILY RNI-like 93 322 - -
Gma16g01578 582 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 258 393 - -
Gma16g01578 582 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Gma16g01578 582 PANTHER LRR RECEPTOR-LIKE KINASE 258 393 - -
Gma16g01578 582 Gene3D Ribonuclease Inhibitor 399 582 IPR032675 -
Gma16g01578 582 Gene3D Ribonuclease Inhibitor 196 296 IPR032675 -
Gma16g01578 582 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Gma16g01578 582 Gene3D Ribonuclease Inhibitor 297 398 IPR032675 -
Gma16g01578 582 PANTHER LRR RECEPTOR-LIKE KINASE 9 288 - -
Gma16g01578 582 PANTHER LRR RECEPTOR-LIKE KINASE 353 582 - -
Gma16g01578 582 PRINTS Leucine-rich repeat signature 234 247 - -
Gma16g01578 582 PRINTS Leucine-rich repeat signature 328 341 - -
Gma16g01578 582 SUPERFAMILY L domain-like 500 582 - -
Gma16g01578 582 SUPERFAMILY L domain-like 248 492 - -
Gma16g01578 582 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
Gma16g01578 582 Pfam Leucine rich repeat 323 365 IPR001611 GO:0005515
Gma16g01578 582 ProSiteProfiles Leucine-rich repeat profile. 157 178 IPR001611 GO:0005515
Gma16g01578 582 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 9 288 - -
Gma16g01578 582 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 353 582 - -
Gma16g01578 582 SMART LRR_typ_2 231 255 IPR003591 -
Gma16g01578 582 SMART LRR_typ_2 280 304 IPR003591 -
Gma16g01578 582 SMART LRR_typ_2 352 376 IPR003591 -
Gma16g01578 582 SMART LRR_typ_2 206 227 IPR003591 -
Gma16g01578 582 SMART LRR_typ_2 328 351 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01578 Gma-Chr16 36453194 36454940 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01578 34 582 Receptor kinase-like Gene Family AT4G13920 30.667 2.02e-51 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01578 - - gmx:100816553 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01578 16 36453194 36454940 Gma16g01578 16 36453194 36454940 ECH