Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01513 ATGAATCCTTTTCATCCTCTGACTCACCAATTTCCCAAGTTACAAGCCTTGGTTTCATCAATTCGAAAATCGTTGGTGTCCCCACAAAACCCAGTTCTTGTATTGGAGCTTCTGGGCAAAGTGTTAGACCAATACCCAGACATCAAAACCTTGAAAAATGTGCATTCCAAGGTTTTTAATCTTAGTTTTCACGAAAATCCATCTCTGGGGATCAAACTCATGCGGGCTTATGCTGCCCGTGGAGAACCCGGGTTGGCACGCAATGTGTTTGATGTAATTCCTGAGAGGAATGTTATTTTCTATAATGTCATGATCAGAAGCTATATGAATAACCATTTGTACGATGATGCATTGCTTGTTTTTAGGGACATGGTTAGTGGTGGTTTTAGCCCTGATCATTATACATACCCTTGTGTCTTGAAGGCTTGTTCTTGCTCTGACAATTTGAGGATTGGGTTGCAGCTTCATGGAGCTGTGTTTAAGGTTGGGCTTGATTTGAATTTGTTTGTTGGGAATGGTCTTATTGCTTTGTATGGGAAGTGTGGTTGCTTGCCTGAGGCACGGTGTGTTCTTGATGAAATGCAGAGCAAGGATGTTGTTTCATGGAACTCAATGGTTGCTGGCTATGCACAGAATATGCAGTTTGATGATGCATTGGATATTTGCCGAGAAATGGATGGTGTGAGGCAGAAGCCTGATGCTTGTACAATGGCTAGTCTCCTGCCAGCAGTAACTAACACTTCCTCGGAAAATGTTTTGTATGTTGAGGAGATGTTCATGAATTTGGAGAAGAAAAGTTTGGTCTCATGGAATGTCATGATAAGTGTATATATGAAAAACTCAATGCCTGGAAAATCTGTAGATCTATATTTACAAATGGGGAAATGTGAAGTGGAACCAGATGCAATCACTTGTGCTAGTGTTCTTCGAGCGTGTGGGGATCTTTCAGCTTTGTTGTTAGGAAGGAGGATTCATGAATATGTTGAGAGAAAGAAGCTATGTCCAAATATGCTTCTGGAGAATTCACTGATAGATATGTATGCTAGGTGTGGATGTCTAGAAGATGCGAAAAGAGTTTTTGACAGAATGAAGTTTCGTGATGTTGCATCATGGACTTCATTGATATCTGCCTATGGTATGACTGGACAAGGCTATAATGCTGTGGCACTCTTCACGGAAATGCAAAATTCAGGTCAAAGTCCAGATTCTATTGCCTTTGTCGCAATTCTCTCAGCTTGTAGTCATTCAGGATTACTCAATGAAGGAAAGTTTTACTTTAAGCAGATGACAGATGATTACAAAATAACACCAATAATTGAACACTTTGCTTGCTTGGTGGATCTATTAGGAAGATCAGGACGAGTGGATGAGGCCTATAATATCATCAAACAGATGCCAATGAAGCCTAATGAAAGAGTTTGGGGGGCACTGCTTAGTTCGTGTCGGGTGTACTCCAACATGGATATTGGGATTTTAGCTGCTGACAAACTACTTCAGTTGGCTCCTGAGGAATCAGGTTACTATGTGTTGTTATCTAATATTTATGCAAAGGCCGGTAGATGGACAGAAGTAACAGCTATTCGATCACTAATGAAGAGAAGAAGAATTCGGAAAATGCCCGGCATCAGCAATGTTGAGCTGAATAACCAGGTCCACACCTTTCTTGCAGGTGATACGTACCACCCACAGTCAAAAGAGATATATGAAGAGTTAAGTGTGCTGGTGGGGAAGATGAAAGAGTTAGGTTATGTGCCCAAGACTGATTCTGCCCTTCATGATGTGGAAGAGGAGGATAAAGAATGCCATCTAGCTGTTCATAGCGAGAAGTTAGCTATTGTCTTTGCTATTTTGAATACCCAAGAATCTCCAATCAGAATTACCAAAAACCTCCGTGTTTGTGGAGATTGTCATATTGCTGCCAAGCTTATCTCCAAGATAGTTCAACGTGAAATTGTCATCAGGGACACCAATCGATTCCATCATTTTAAGGATGCTGAGTCAACTCGCTCTATTTCCGTACTCATCGAAACCTCAGATCTGGAAGCTACGCTCCTCTTCTTCCACCATTGTCGTCACACCGACACATCACCGCCAATATCTTCTCCATCACCGGCAAAGTCGTCGATGTTCCTCGCCGGAGCTGTTCTACCACAAGACTGCGTCGATGCTGGATCTGAACCTGATTCGGTCCCAAACAGTGTGGGAGGTTTAGGACTTGAACGGAGCAAAAGCTTCCACTTCTGCTCTGTGAGCACAATGCAGAACGCACGAAACAATTCATGGTGTTCTAGAAACGTGTGTCGTCAAACAGCGACGAGAATGCACAAGAACCAACTAAGATTAGACGATGAATTGGGAACAAAAAAGCAAACATGA 2376 0.4221 MNPFHPLTHQFPKLQALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDAESTRSISVLIETSDLEATLLFFHHCRHTDTSPPISSPSPAKSSMFLAGAVLPQDCVDAGSEPDSVPNSVGGLGLERSKSFHFCSVSTMQNARNNSWCSRNVCRQTATRMHKNQLRLDDELGTKKQT 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01513 791 Gene3D Tetratricopeptide repeat domain 365 545 IPR011990 GO:0005515
Gma16g01513 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Gma16g01513 791 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 15 667 - -
Gma16g01513 791 Pfam PPR repeat 341 366 IPR002885 -
Gma16g01513 791 Pfam PPR repeat 172 198 IPR002885 -
Gma16g01513 791 Pfam PPR repeat 444 466 IPR002885 -
Gma16g01513 791 Pfam PPR repeat 200 225 IPR002885 -
Gma16g01513 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Gma16g01513 791 Pfam E motif 484 546 IPR046848 -
Gma16g01513 791 Pfam PPR repeat family 367 414 IPR002885 -
Gma16g01513 791 Pfam PPR repeat family 266 312 IPR002885 -
Gma16g01513 791 Pfam PPR repeat family 96 143 IPR002885 -
Gma16g01513 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Gma16g01513 791 Pfam DYW family of nucleic acid deaminases 582 666 IPR032867 GO:0008270
Gma16g01513 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Gma16g01513 791 Pfam E+ motif 551 577 IPR046849 -
Gma16g01513 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 366 IPR002885 -
Gma16g01513 791 TIGRFAM PPR: pentatricopeptide repeat domain 370 402 IPR002885 -
Gma16g01513 791 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Gma16g01513 791 TIGRFAM PPR: pentatricopeptide repeat domain 341 368 IPR002885 -
Gma16g01513 791 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Gma16g01513 791 TIGRFAM PPR: pentatricopeptide repeat domain 101 132 IPR002885 -
Gma16g01513 791 Gene3D Tetratricopeptide repeat domain 250 318 IPR011990 GO:0005515
Gma16g01513 791 Gene3D Tetratricopeptide repeat domain 47 159 IPR011990 GO:0005515
Gma16g01513 791 Gene3D Tetratricopeptide repeat domain 160 249 IPR011990 GO:0005515
Gma16g01513 791 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01513 Gma-Chr16 35006472 35010064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01513 63 668 Glycoside Hydrolase AT3G49170 37.060 1.57e-132 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01513 - - gmx:100787841 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01513 16 35006472 35010064 Gma16g01513 16 35006472 35010064 ECH