Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01180 ATGGTGCTCGAGgcgactatgatctgtatagacaattcggaatggaTGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTTCGTGTTTTGGTGACCCCTACCAGTGATTTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTTGCGCAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGTCCTGTTAATCATGAGAAGAAAATGTTGGAGATGATTGGGAGGAAATTGAAAAAGAATAGTGTAGCACTTGACGTTGTCAATTTTGGTGAAGAAGATGAGGGTAAGACAGAGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCCCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCTGCAGGCAGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAACTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAGGAAGCAGCTGCCAAAAAGGCAGCAGAGGATGCTGCTAAACAGGAGAAAGATGGTGAGCAGCAAGCTAGCCCACAGGATACAACAATGACTAAGGGTGTTAGTGCAGCAGCTTCTGAAGCTGAGACTAAAAGAACTGATTTGACGGTCAACGAGAATGCTCTTCTACAGCAGGCCCTTGCAATGTCTATGGATGATCCCACAATTAACCACGACATGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCTGAGTTGGCTCTAGCTCTCCAATTGTCTGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAGCTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGCCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA 1197 0.4503 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAANLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVNHEKKMLEMIGRKLKKNSVALDVVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAGSVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKDGEQQASPQDTTMTKGVSAAASEAETKRTDLTVNENALLQQALAMSMDDPTINHDMRDTDMSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASLQNQSEPQQKNEDKPPNEEEKK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01180 398 MobiDBLite consensus disorder prediction 235 284 - -
Gma16g01180 398 Coils Coil 225 252 - -
Gma16g01180 398 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 215 234 IPR003903 -
Gma16g01180 398 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Gma16g01180 398 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 398 - -
Gma16g01180 398 Pfam Ubiquitin interaction motif 318 333 IPR003903 -
Gma16g01180 398 Pfam Ubiquitin interaction motif 217 230 IPR003903 -
Gma16g01180 398 Pfam Ubiquitin interaction motif 286 300 IPR003903 -
Gma16g01180 398 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 317 336 IPR003903 -
Gma16g01180 398 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 398 - -
Gma16g01180 398 Gene3D - 213 299 - -
Gma16g01180 398 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Gma16g01180 398 SMART uim 285 304 IPR003903 -
Gma16g01180 398 SMART uim 317 336 IPR003903 -
Gma16g01180 398 SMART uim 215 234 IPR003903 -
Gma16g01180 398 MobiDBLite consensus disorder prediction 358 398 - -
Gma16g01180 398 SUPERFAMILY vWA-like 4 175 IPR036465 -
Gma16g01180 398 SMART VWA_4 2 175 IPR002035 -
Gma16g01180 398 Pfam von Willebrand factor type A domain 6 116 IPR002035 -
Gma16g01180 398 MobiDBLite consensus disorder prediction 256 284 - -
Gma16g01180 398 CDD VWA_26S_proteasome_subunit 1 188 - -
Gma16g01180 398 MobiDBLite consensus disorder prediction 372 386 - -
Gma16g01180 398 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01180 Gma-Chr16 29313764 29318589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01180 K03029 - gmx:100791370 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01180 16 29313764 29318589 Gma16g01180 16 29313764 29318589 ECH