Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01089 ATGTACGGTCCCCGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGAACAGGCAACTTACCTTATGGGTATGCTGGTGGCTTCCAGCCCCCTCCCTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTCAACTGCACTGACATTGACATCTTGAAGTTCTTTGCTGGACTGACCATTGTGGATGTCTTGCTGGTCAACAAGAGTGGACGGTTCTCGGGCGAGGCCTTCGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCGTTACAAAGAGATCGCCAGAACATGGGTCGCCGATATGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTATAATGCTGTTGCTGCTGAGATCAAGTACGAAGGAATATATGATAATGACTACCAAGGTAGTAGCCCTCCACCCTCCCGGTCGAAGAGGTTCAATGATAAAGACCAAATGGAGTGCACTGAAATATTGAAGATGCGCGGCCTTCCATTCCAAGTGACCAAATCTCAAATTGTTGAATTCTTTAAAGATTTCAAGCTGATAGAAGATAGGGTACACATTGCATGTCGCCCTGATGGGAAATCTACTGGAGAGGCATATGTGGAGTTTGTTTCTGCTGAGGAGGCTAAGAGGGCAATGTCCAAGGATAAAATGACCATAGGATCAAGGTATGTAGAGCTGTTTCCTTCTACACCAGATGAAGCTAGACGGGCAGAGTCAAGATCAAGGCAGTAA 795 0.4792 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGNLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAAEIKYEGIYDNDYQGSSPPPSRSKRFNDKDQMECTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIACRPDGKSTGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01089 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 176 248 - -
Gma16g01089 264 SUPERFAMILY RNA-binding domain, RBD 175 261 IPR035979 GO:0003676
Gma16g01089 264 SMART rrm1_1 176 248 IPR000504 GO:0003723
Gma16g01089 264 SMART rrm1_1 58 127 IPR000504 GO:0003723
Gma16g01089 264 Gene3D - 159 264 IPR012677 -
Gma16g01089 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 58 127 - -
Gma16g01089 264 Gene3D - 56 140 IPR012677 -
Gma16g01089 264 SUPERFAMILY RNA-binding domain, RBD 49 136 IPR035979 GO:0003676
Gma16g01089 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 245 IPR000504 GO:0003723
Gma16g01089 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 122 IPR000504 GO:0003723
Gma16g01089 264 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 264 - -
Gma16g01089 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Gma16g01089 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01089 Gma-Chr16 27614596 27616812 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01089 K12898 - gmx:100819738 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01089 16 27614596 27616812 Gma16g01089 16 27614596 27616812 ECH